View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8773_high_1 (Length: 556)

Name: NF8773_high_1
Description: NF8773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8773_high_1
NF8773_high_1
[»] chr7 (6 HSPs)
chr7 (20-539)||(5288531-5289051)
chr7 (366-528)||(5311176-5311341)
chr7 (366-539)||(5315879-5316051)
chr7 (401-539)||(5303264-5303402)
chr7 (409-528)||(5285087-5285206)
chr7 (404-522)||(46706207-46706325)
[»] chr5 (7 HSPs)
chr5 (401-526)||(1505758-1505883)
chr5 (415-523)||(1492952-1493060)
chr5 (400-520)||(1482980-1483100)
chr5 (446-511)||(1487466-1487531)
chr5 (444-508)||(1500039-1500103)
chr5 (446-508)||(1478798-1478860)
chr5 (422-478)||(1509931-1509987)
[»] chr6 (1 HSPs)
chr6 (20-153)||(8034753-8034882)
[»] chr1 (3 HSPs)
chr1 (401-522)||(44129359-44129480)
chr1 (406-526)||(44141982-44142102)
chr1 (401-526)||(44133560-44133685)
[»] chr4 (2 HSPs)
chr4 (154-320)||(42965887-42966069)
chr4 (29-97)||(51380205-51380273)
[»] chr2 (1 HSPs)
chr2 (453-520)||(24163058-24163125)


Alignment Details
Target: chr7 (Bit Score: 497; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 20 - 539
Target Start/End: Original strand, 5288531 - 5289051
Alignment:
Q  20 gttgcgatcgacgagtgttgagtacatgagagtatcgagaacgatgataacgagacggttaattgaaggtttggtccaacatgaattgttattgggaaga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5288531 gttgcgatcgacgagtgttgagtacatgagagtatcgagaacgatgataacgagacggttaattgaaggtttggtccaacatgaattgttattgggaaga 5288630  T
Q  120 acaacaaatagatagatgatcacaccaaacttctaataaaaagaacaaatactaaatgaatggaaacattttccttgacaaaatataatgaatgacatgg 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5288631 acaacaaatagatagatgatcacaccaaacttctaataaaaagaacaaatactaaatgaatggaaacattttccctgacaaaatataatgaatgacatgg 5288730  T
Q  220 aacacttaaaaagaacacaagatatcaaaattgactttaatttgtttcaaagacatattggcac-aacaaatataggattgtacatggtatttgcacatc 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5288731 aacacttaaaaagaacacaagatatcaaaattgactttaatttgtttcaaagacatattggcacaaacaaatataggattgtacatggtatttgcacatc 5288830  T
Q  319 aacatgtttgctgctatattcagaatctgttatgcagatttctacttcatccttacatcaaagttaaacaaatttgaaatcaatgaaaataaaataatta 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5288831 aacatgtttgctgctatattcagaatctgttatgcagatttctacttcatccttacataaaagttaaacaaatttgaaatcaatgaaaataaaataatta 5288930  T
Q  419 aacatctcatatggctacactacgtaaaacaacagtttcaatggtaagtcctggtccaaaaccaaataagacaccccattcaagtccttctccagttgtc 518  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5288931 aacatctcatatggccacactacgtaaaacaacagtttcaatggtaagtcctggtccaaaaccaaataagacaccccattcaagtccttctccagttgtc 5289030  T
Q  519 ttcaatccgtctatagttgat 539  Q
    |||||||||||||| ||||||    
T  5289031 ttcaatccgtctatggttgat 5289051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 366 - 528
Target Start/End: Complemental strand, 5311341 - 5311176
Alignment:
Q  366 catccttacatcaaagttaaacaaatttgaaatc----aatgaaaataaaataattaaacatctcatatggctacactacgtaaaacaacagtttcaatg 461  Q
    ||||| ||||| |||| ||||||||||  |||||    ||||||||||||||| |||||||||||||||||  |||||||| |||||||| |||||||||    
T  5311341 catccatacataaaagataaacaaattataaatcgataaatgaaaataaaata-ttaaacatctcatatggtcacactacgcaaaacaactgtttcaatg 5311243  T
Q  462 gtaagtcctggtccaaaaccaaataagacaccccattcaagtccttctccagttgtcttcaatccgt 528  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||    
T  5311242 gtaagtcctggtccaaaaccaaataatacaccccactcaagtccttctcccgttgtcttcaatccgt 5311176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 366 - 539
Target Start/End: Complemental strand, 5316051 - 5315879
Alignment:
Q  366 catccttacatcaaagttaaacaaatttgaaatcaatgaaaataaaataattaaacatctcatatggctacactacgtaaaacaacagtttcaatggtaa 465  Q
    |||| |||||| ||| |||||||||||||||||| ||  | | ||||||| ||| |||||||||| || || || || |||||||| |||||||||||||    
T  5316051 catcattacataaaaattaaacaaatttgaaatcgatacata-aaaataaataagcatctcatatagccacgctgcgcaaaacaaccgtttcaatggtaa 5315953  T
Q  466 gtcctggtccaaaaccaaataagacaccccattcaagtccttctccagttgtcttcaatccgtctatagttgat 539  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  5315952 gtcctggtccaaaaccaaataatacaccccattcaagtccttctcccgttgtcttcaatccgtctttagttgat 5315879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 401 - 539
Target Start/End: Complemental strand, 5303402 - 5303264
Alignment:
Q  401 atgaaaataaaataattaaacatctcatatggctacactacgtaaaacaacagtttcaatggtaagtcctggtccaaaaccaaataagacaccccattca 500  Q
    ||||||| ||||||||||| |||||||||| || ||||| || |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||    
T  5303402 atgaaaacaaaataattaagcatctcatatagcgacactgcgcaaaacaaccgtttcaattgtaagtcctggtccaaaaccaaataacacaccccattca 5303303  T
Q  501 agtccttctccagttgtcttcaatccgtctatagttgat 539  Q
    ||||||||||||||||||||||| || ||| ||||||||    
T  5303302 agtccttctccagttgtcttcaacccatctttagttgat 5303264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 409 - 528
Target Start/End: Complemental strand, 5285206 - 5285087
Alignment:
Q  409 aaaataattaaacatctcatatggctacactacgtaaaacaacagtttcaatggtaagtcctggtccaaaaccaaataagacaccccattcaagtccttc 508  Q
    |||| |||||| ||||||||||||| ||||| || |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5285206 aaaaaaattaagcatctcatatggcaacactgcgcaaaacaacggtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttc 5285107  T
Q  509 tccagttgtcttcaatccgt 528  Q
    ||| ||||||||||||||||    
T  5285106 tcccgttgtcttcaatccgt 5285087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 404 - 522
Target Start/End: Original strand, 46706207 - 46706325
Alignment:
Q  404 aaaataaaataattaaacatctcatatggctacactacgtaaaacaacagtttcaatggtaagtcctggtccaaaaccaaataagacaccccattcaagt 503  Q
    |||||||||||||||| ||| |||||| || |||||  | |||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||    
T  46706207 aaaataaaataattaagcatttcatatagcgacactgtgcaaaacaacagtttctatggtaagtcctggtccaaagccaaataacacaccccattcaagt 46706306  T
Q  504 ccttctccagttgtcttca 522  Q
    |||||||| ||||||||||    
T  46706307 ccttctcctgttgtcttca 46706325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 401 - 526
Target Start/End: Complemental strand, 1505883 - 1505758
Alignment:
Q  401 atgaaaataaaataattaaacatctcatatggctacactacgtaaaacaacagtttcaatggtaagtcctggtccaaaaccaaataagacaccccattca 500  Q
    ||||||||||||||||||| |||||||||| || |||||||| ||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||||    
T  1505883 atgaaaataaaataattaagcatctcatatagcaacactacgcaaaacaacagtttcaatagtaagtcccggtccaaagccaaataacacaccccattca 1505784  T
Q  501 agtccttctccagttgtcttcaatcc 526  Q
     |||||||||| || |||||||||||    
T  1505783 tgtccttctccggtagtcttcaatcc 1505758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 415 - 523
Target Start/End: Complemental strand, 1493060 - 1492952
Alignment:
Q  415 attaaacatctcatatggctacactacgtaaaacaacagtttcaatggtaagtcctggtccaaaaccaaataagacaccccattcaagtccttctccagt 514  Q
    ||||| ||||| |||| |||||||| || || |||||||| ||||||||||||||||||||||| || ||||  |||||||||||| | |||||||| ||    
T  1493060 attaagcatcttatatagctacactgcgcaagacaacagtctcaatggtaagtcctggtccaaagccgaatagcacaccccattcatgcccttctccggt 1492961  T
Q  515 tgtcttcaa 523  Q
    |||||||||    
T  1492960 tgtcttcaa 1492952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 400 - 520
Target Start/End: Complemental strand, 1483100 - 1482980
Alignment:
Q  400 aatgaaaataaaataattaaacatctcatatggctacactacgtaaaacaacagtttcaatggtaagtcctggtccaaaaccaaataagacaccccattc 499  Q
    |||||||||||| ||||||| | | |||||| || |||||  | |||||||| ||||||||||||||||| |||||||| || || || |||||||| ||    
T  1483100 aatgaaaataaactaattaagcttatcatatagccacactgtgcaaaacaacggtttcaatggtaagtccaggtccaaagccgaacaacacaccccaatc 1483001  T
Q  500 aagtccttctccagttgtctt 520  Q
    ||| |||||||| || |||||    
T  1483000 aagcccttctcctgtggtctt 1482980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 446 - 511
Target Start/End: Complemental strand, 1487531 - 1487466
Alignment:
Q  446 aacaacagtttcaatggtaagtcctggtccaaaaccaaataagacaccccattcaagtccttctcc 511  Q
    |||||||||||||||||||||||| |||||||| || || || || ||||||| ||||||||||||    
T  1487531 aacaacagtttcaatggtaagtccaggtccaaagccgaacaacactccccatttaagtccttctcc 1487466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 508
Target Start/End: Complemental strand, 1500103 - 1500039
Alignment:
Q  444 aaaacaacagtttcaatggtaagtcctggtccaaaaccaaataagacaccccattcaagtccttc 508  Q
    |||||||||||||||||||||||||| |||||||| |  || || |||||||||||  |||||||    
T  1500103 aaaacaacagtttcaatggtaagtccaggtccaaagcttaacaatacaccccattcttgtccttc 1500039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 508
Target Start/End: Complemental strand, 1478860 - 1478798
Alignment:
Q  446 aacaacagtttcaatggtaagtcctggtccaaaaccaaataagacaccccattcaagtccttc 508  Q
    |||||| ||||||||||| ||||| |||||||| ||||| || |||||||| ||||| |||||    
T  1478860 aacaactgtttcaatggtgagtccaggtccaaagccaaacaacacaccccagtcaaggccttc 1478798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 1509987 - 1509931
Alignment:
Q  422 atctcatatggctacactacgtaaaacaacagtttcaatggtaagtcctggtccaaa 478  Q
    |||| ||||||||||||| || | |||||| ||||||||||||||||  ||||||||    
T  1509987 atcttatatggctacactgcgaagaacaactgtttcaatggtaagtctaggtccaaa 1509931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 8034882 - 8034753
Alignment:
Q  20 gttgcgatcgacgagtgttgagtacatgagagtatcgagaacgatgataacgagacggttaattgaaggtttggtccaacatgaattgttattgggaaga 119  Q
    |||| |||| ||||||||||| ||| |||||| |||| |||||||| ||||||||||||||||| |||||||||||||||| ||||||     | |||||    
T  8034882 gttgtgatcaacgagtgttgaatacttgagagcatcgggaacgatggtaacgagacggttaattaaaggtttggtccaacaggaattg----ggagaaga 8034787  T
Q  120 acaacaaatagatagatgatcacaccaaacttct 153  Q
    ||||||||||||||||||||||||||||||||||    
T  8034786 acaacaaatagatagatgatcacaccaaacttct 8034753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 3e-31; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 401 - 522
Target Start/End: Complemental strand, 44129480 - 44129359
Alignment:
Q  401 atgaaaataaaataattaaacatctcatatggctacactacgtaaaacaacagtttcaatggtaagtcctggtccaaaaccaaataagacaccccattca 500  Q
    ||||||||||||||||||| || ||||||| || ||||| || ||||||||||||||||| ||||| ||||||||||| |||||||| |||||||| |||    
T  44129480 atgaaaataaaataattaagcacctcatatagcgacactgcgcaaaacaacagtttcaatagtaagacctggtccaaagccaaataaaacaccccactca 44129381  T
Q  501 agtccttctccagttgtcttca 522  Q
    ||||||||||| || |||||||    
T  44129380 agtccttctcccgtggtcttca 44129359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 406 - 526
Target Start/End: Complemental strand, 44142102 - 44141982
Alignment:
Q  406 aataaaataattaaacatctcatatggctacactacgtaaaacaacagtttcaatggtaagtcctggtccaaaaccaaataagacaccccattcaagtcc 505  Q
    |||||||||||||| || ||||||| || ||||| |||||||||||||||||||||||||| || |||||||| |||||||| |||||  | ||||||||    
T  44142102 aataaaataattaagcacctcatatagcgacactgcgtaaaacaacagtttcaatggtaagacccggtccaaagccaaataaaacaccaaactcaagtcc 44142003  T
Q  506 ttctccagttgtcttcaatcc 526  Q
    |||||| || |||||||||||    
T  44142002 ttctcccgtggtcttcaatcc 44141982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 401 - 526
Target Start/End: Complemental strand, 44133685 - 44133560
Alignment:
Q  401 atgaaaataaaataattaaacatctcatatggctacactacgtaaaacaacagtttcaatggtaagtcctggtccaaaaccaaataagacaccccattca 500  Q
    ||||||||||||||| ||| || ||||||| || | ||| || ||||||||||||||||||||||| || |||||||| |||||||| |||||  |||||    
T  44133685 atgaaaataaaataaataagcacctcatatagcgatacttcgcaaaacaacagtttcaatggtaagacccggtccaaagccaaataaaacaccaaattca 44133586  T
Q  501 agtccttctccagttgtcttcaatcc 526  Q
    ||||||||||| || |||||||||||    
T  44133585 agtccttctcctgtggtcttcaatcc 44133560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 154 - 320
Target Start/End: Complemental strand, 42966069 - 42965887
Alignment:
Q  154 aataaaaagaacaaatactaaatgaatggaaacattttccttgacaaaatataatgaatgacatggaacactt---------------aaaaagaacaca 238  Q
    ||||||||| |||||||||| ||||||| ||| ||||| |||||||||||||||| |||||||||||||||||               |||| ||| |||    
T  42966069 aataaaaaggacaaatactagatgaatgaaaatatttttcttgacaaaatataataaatgacatggaacacttctatctcccctaaaaaaaacgaataca 42965970  T
Q  239 agatatcaaaattgactttaatttgtttcaaagacat-attggcacaacaaatataggattgtacatggtatttgcacatcaa 320  Q
    || |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||  |||| ||||||||||||||    
T  42965969 agctatctaaattgactttaatttgtttcaaagacatgattggcacaacaaatataggactgcccatgatatttgcacatcaa 42965887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 51380205 - 51380273
Alignment:
Q  29 gacgagtgttgagtacatgagagtatcgagaacgatgataacgagacggttaattgaaggtttggtcca 97  Q
    |||||||||||||||| | |||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  51380205 gacgagtgttgagtacctaagagcatcgagaacgatgataacgagacggttaattgcaggtttggtcca 51380273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 520
Target Start/End: Original strand, 24163058 - 24163125
Alignment:
Q  453 gtttcaatggtaagtcctggtccaaaaccaaataagacaccccattcaagtccttctccagttgtctt 520  Q
    |||||||||||||||||||| ||||| |  || || |||||||||||||| |||||||| || |||||    
T  24163058 gtttcaatggtaagtcctggcccaaagcttaacaacacaccccattcaagcccttctcctgtggtctt 24163125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University