View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8773_low_1 (Length: 620)
Name: NF8773_low_1
Description: NF8773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8773_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 541; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 18 - 602
Target Start/End: Complemental strand, 27066044 - 27065460
Alignment:
| Q |
18 |
agttataataaaactactgcttcaactaactctcttagtgatagtggtagtttggcaaaaaacatggttcaacctggtaagtttttccgggagaaaatgt |
117 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27066044 |
agttataataaaactactacttcaactaactctctcagtgatagtggtagtttggcaaaaaacatggttcaacctggtaagtttttccgggagaagatgt |
27065945 |
T |
|
| Q |
118 |
tgaaggaagggacagttatgcctatgccagatataagggataaattaccgccaaggtcgtttttgcctcgttccattttgaccaaattgccatttgcatc |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27065944 |
tgaaggaagggacagttatgcctatgccagatataagggataaattaccgccaaggtcgtttttgcctcgttccattttgaccaaattgccatttgcatc |
27065845 |
T |
|
| Q |
218 |
ctctaagttgaatgagatgaagcaggtttttaaggtgtccgagaattcttcgatgaacaaaatgatggtggatgcgttgagtgagtgcgagagggcgccg |
317 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
27065844 |
ttctaagttgaatgagatgaagcaagttttcaaggtgtccgagaattcttcgatgaataagatgatggtggatgcgttgagtgagtgcgagagggcgccg |
27065745 |
T |
|
| Q |
318 |
agtgtaggtgaaacgaagcgttgtgtgggttctcttgaggatatgattgattttgcaacttctgttttgggtcacagtgttactgttcgatccactgaga |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27065744 |
agtgtaggtgaaacgaagcgttgtgtgggttctcttgaggatatgattgattttgcaacttctgttttgggtcacagtgttactgttcggtccactgaga |
27065645 |
T |
|
| Q |
418 |
atgtaaatggggcgggcaaggatgtcatggtgggtaaagttaaggggataaatggtggaaaagttactgaatctgtgtcgtgccaccagagtttgtttcc |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
27065644 |
atgtaaatggggcgggcaaggatgtcatggtgggtaaagttaaggggataaatggtggaaaagttactgaatctgtatcgtgtcaccagagtttgtttcc |
27065545 |
T |
|
| Q |
518 |
ttatttgttatactactgtcactcggttccaaatgttcatgtctatgaagcggatctattggatccagtttctaaggcaaagatt |
602 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27065544 |
ttatttgttatactactgtcactcggttccaaatgttcatgtctatgaagcggatctattggatccagtttctaaggcaaagatt |
27065460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 37 - 583
Target Start/End: Complemental strand, 27079742 - 27079196
Alignment:
| Q |
37 |
cttcaactaactctcttagtgatagtggtagtttggcaaaaaacatggttcaacctggtaagtttttccgggagaaaatgttgaaggaagggacagttat |
136 |
Q |
| |
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||||||| || ||| ||||||| |||| ||||||||||||||| |||||||||||||||||||||||| || || |||||||| ||||| ||||| |
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| T |
27079742 |
cttcaacaaattctgttagtgaaagtgttagtttggcaaaaaaatgggttcaacctggtaagtttttccgagaaaagatgttgaaacaaggggtggttat |
27079643 |
T |
|
| Q |
137 |
gcctatgccagatataagggataaattaccgccaaggtcgtttttgcctcgttccattttgaccaaattgccatttgcatcctctaagttgaatgagatg |
236 |
Q |
| |
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||||||||| ||||| | ||||||||||||||||||||||||||| || ||| |||||||||||||||| || |||||||| ||||||||||||||| || |
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|
| T |
27079642 |
gcctatgccggatattaaggataaattaccgccaaggtcgtttttaccacgtaccattttgaccaaattaccctttgcatcttctaagttgaatgagttg |
27079543 |
T |
|
| Q |
237 |
aagcaggtttttaaggtgtccgagaattcttcgatgaacaaaatgatggtggatgcgttgagtgagtgcgagagggcgccgagtgtaggtgaaacgaagc |
336 |
Q |
| |
|
||||| |||||||||||||| |||||||| |||||| | || ||||| ||||| | ||| ||||||| |||||||| |||||| | ||||| || |||| |
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| T |
27079542 |
aagcaagtttttaaggtgtctgagaattcctcgatggataagatgatagtggactcattgggtgagtgtgagagggcaccgagtatgggtgagacaaagc |
27079443 |
T |
|
| Q |
337 |
gttgtgtgggttctcttgaggatatgattgattttgcaacttctgttttgggtcacagtgttactgttcgatccactgagaatgtaaatggggcgggcaa |
436 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| ||||||||||| |||||||| || ||| ||||||||||| ||||||| ||||||||| ||||||| |
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|
| T |
27079442 |
gttgtgttggttcacttgaggatatgattgactttgcaacttcagttttgggccatgatgtaactgttcgatcaactgagagtgtaaatggatcgggcaa |
27079343 |
T |
|
| Q |
437 |
ggatgtcatggtgggtaaagttaaggggataaatggtggaaaagttactgaatctgtgtcgtgccaccagagtttgtttccttatttgttatactactgt |
536 |
Q |
| |
|
|||||||||| || | ||||| ||||| ||||| || |||||||||||||||||||| || ||||| |||||||||||||||||| ||||||| || |
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|
| T |
27079342 |
aaatgtcatggttggaagggttaaagggatcaatgggggtaaagttactgaatctgtgtcatgtcaccaaagtttgtttccttatttgctatactattgc |
27079243 |
T |
|
| Q |
537 |
cactcggttccaaatgttcatgtctatgaagcggatctattggatcc |
583 |
Q |
| |
|
|||||||||||||| |||| ||| |||||||| ||||| || ||||| |
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|
| T |
27079242 |
cactcggttccaaaggttcgtgtttatgaagcagatcttttagatcc |
27079196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 82 - 580
Target Start/End: Complemental strand, 27053538 - 27053040
Alignment:
| Q |
82 |
tggttcaacctggtaagtttttccgggagaaaatgttgaaggaagggacagttatgcctatgccagatataagggataaattaccgccaaggtcgttttt |
181 |
Q |
| |
|
||||| |||| |||||||||||||| || | ||||||||||||||||| ||||||||||||||||||| ||||||||| ||||| || ||||||||||| |
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|
| T |
27053538 |
tggttgaaccaggtaagtttttccgcgaaaggatgttgaaggaagggactgttatgcctatgccagatacaagggataagttaccacctaggtcgttttt |
27053439 |
T |
|
| Q |
182 |
gcctcgttccattttgaccaaattgccatttgcatcctctaagttgaatgagatgaagcaggtttttaaggtgtccgagaattcttcgatgaacaaaatg |
281 |
Q |
| |
|
||| ||||||||||||| ||||||||| |||||||| ||||||||||| | |||||||| ||||| |||||||| || ||||| | ||| | || ||| |
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| T |
27053438 |
gccacgttccattttgatcaaattgccctttgcatcttctaagttgaacaatatgaagcaagttttcaaggtgtctgaaaattcctttatggaaaagatg |
27053339 |
T |
|
| Q |
282 |
atggtggatgcgttgagtgagtgcgagagggcgccgagtgtaggtgaaacgaagcgttgtgtgggttctcttgaggatatgattgattttgcaacttctg |
381 |
Q |
| |
|
|| ||||| | ||||||||||| || || ||||| ||| |||||| | ||||||||||| ||||| |||||||| |||||||| |||||||||||| |
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|
| T |
27053338 |
atagtggactcattgagtgagtgtgaaagagcgccaagtaaaggtgagatcaagcgttgtgtaggttcgcttgaggacatgattgactttgcaacttcta |
27053239 |
T |
|
| Q |
382 |
ttttgggtcacagtgttactgttcgatccactgagaatgtaaatggggcgggcaaggatgtcatggtgggtaaagttaaggggataaatggtggaaaagt |
481 |
Q |
| |
|
|||||||| || ||| || ||||| ||||||||||||||||||||| || ||| |||| ||||| ||| |||| |||| |||||||||||| || || |
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|
| T |
27053238 |
ttttgggtagcaatgtgacggttcggtccactgagaatgtaaatgggtcgaacaacaatgttatggtaggtcaagtaaaggagataaatggtgggaacgt |
27053139 |
T |
|
| Q |
482 |
tactgaatctgtgtcgtgccaccagagtttgtttccttatttgttatactactgtcactcggttccaaatgttcatgtctatgaagcggatctattgga |
580 |
Q |
| |
|
|| || || ||||| || || || |||||||||||||| ||| |||| |||||||| ||||| |||||| ||| | ||||||||| |||| ||||| |
|
|
| T |
27053138 |
tatggagtcagtgtcttgtcatcaaagtttgtttccttacttgctatattactgtcattcggtgccaaatattcgaatttatgaagcgaatcttttgga |
27053040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 60 - 181
Target Start/End: Original strand, 14866036 - 14866157
Alignment:
| Q |
60 |
agtggtagtttggcaaaaaacatggttcaacctggtaagtttttccgggagaaaatgttgaaggaagggacagttatgcctatgccagatataagggata |
159 |
Q |
| |
|
||||||||||||| |||||| |||| | |||||||||||||| | |||||||||||||| ||||| || || ||||||||||| ||||| || |||| |
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|
| T |
14866036 |
agtggtagtttggtaaaaaaatgggttgagcctggtaagttttttagagagaaaatgttgaaagaaggtacggtaatgcctatgcctgatattagagata |
14866135 |
T |
|
| Q |
160 |
aattaccgccaaggtcgttttt |
181 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
14866136 |
aattacctaaaaggtcgttttt |
14866157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 339 - 547
Target Start/End: Original strand, 14866315 - 14866523
Alignment:
| Q |
339 |
tgtgtgggttctcttgaggatatgattgattttgcaacttctgttttgggtcacagtgttactgttcgatccactgagaatgtaaatggggcgggcaagg |
438 |
Q |
| |
|
||||| || ||| ||||||||||||| || ||||||||||| |||||||||| | ||| ||||| | |||||||||||||||||| || |||| |
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|
| T |
14866315 |
tgtgttgggtctattgaggatatgatcgactttgcaacttcggttttgggtcgaaatgtggtggttcggactactgagaatgtaaatgggtcgaagaagg |
14866414 |
T |
|
| Q |
439 |
atgtcatggtgggtaaagttaaggggataaatggtggaaaagttactgaatctgtgtcgtgccaccagagtttgtttccttatttgttatactactgtca |
538 |
Q |
| |
|
|||| ||||||||| ||||| ||||| ||||| || ||||| || ||||| ||||| || |||||||||||||| |||||| | || || ||||| |
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|
| T |
14866415 |
atgttatggtgggtcgggttaatgggattaatggcgggaaagtgacccggtctgtttcgtgtcatcagagtttgtttccgtatttgctttattattgtca |
14866514 |
T |
|
| Q |
539 |
ctcggttcc |
547 |
Q |
| |
|
||||||||| |
|
|
| T |
14866515 |
ctcggttcc |
14866523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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