View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8773_low_4 (Length: 381)
Name: NF8773_low_4
Description: NF8773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8773_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 136 - 364
Target Start/End: Complemental strand, 6922599 - 6922371
Alignment:
| Q |
136 |
cacgatgtgatatgagcatgaatggaattgtatatgactgtgaattttttatgaataggctttgaagggtgtgagagagaaggttgaattggctactaag |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6922599 |
cacgatgtgatatgagcatgaatggaattgtatatgactgtgaattttttatgaataggctttgaagggtgtgagagagaaggttgaattggctactaag |
6922500 |
T |
|
| Q |
236 |
tttggagtcagagctggtgatggaaaatttgagatctgtggtgatccaggttatgtgagagaagcttgtgagggtagcttgaagagacttgatattgatt |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6922499 |
tttggagtcagagctggtgatggaaaatttgagatctgtggtgatccaggttatgtgagagaagcttgtgagggtagcttgaagagacttgatattgatt |
6922400 |
T |
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| Q |
336 |
gtattgatctctattatcaacatcgtatt |
364 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
6922399 |
gtattgatctctattatcaacatcgtatt |
6922371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 136 - 364
Target Start/End: Original strand, 6955613 - 6955841
Alignment:
| Q |
136 |
cacgatgtgatatgagcatgaatggaattgtatatgactgtgaattttttatgaataggctttgaagggtgtgagagagaaggttgaattggctactaag |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6955613 |
cacgatgtgatatgagcatgaatggaattgtatatgactgtgaattttttatgaataggctttgaagggtgtgagagagaaggttgaattggctactaag |
6955712 |
T |
|
| Q |
236 |
tttggagtcagagctggtgatggaaaatttgagatctgtggtgatccaggttatgtgagagaagcttgtgagggtagcttgaagagacttgatattgatt |
335 |
Q |
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| T |
6955713 |
tttggagtcagagctggtgatggaaaatttgagatctgtggtgatccaggttatgtgagagaagcttgtgagggtagcttgaagagacttgatattgatt |
6955812 |
T |
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| Q |
336 |
gtattgatctctattatcaacatcgtatt |
364 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
6955813 |
gtattgatctctattatcaacatcgtatt |
6955841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 188 - 364
Target Start/End: Complemental strand, 6918368 - 6918192
Alignment:
| Q |
188 |
gaataggctttgaagggtgtgagagagaaggttgaattggctactaagtttggagtcagagctggtgatggaaaatttgagatctgtggtgatccaggtt |
287 |
Q |
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|||||||||||||||| || |||||||| |||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
6918368 |
gaataggctttgaaggtagttagagagaaagttgaattggctacaaaatttggagtcagagctggtgatggaaaagttgagatctgtggtgatccaggct |
6918269 |
T |
|
| Q |
288 |
atgtgagagaagcttgtgagggtagcttgaagagacttgatattgattgtattgatctctattatcaacatcgtatt |
364 |
Q |
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| T |
6918268 |
atgtgagagtagcttgtgagggcagcttgaagagacttgatattgattgtattgatctctattatcaacatcgtatt |
6918192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 209 - 364
Target Start/End: Complemental strand, 6969783 - 6969628
Alignment:
| Q |
209 |
agagagaaggttgaattggctactaagtttggagtcagagctggtgatggaaaatttgagatctgtggtgatccaggttatgtgagagaagcttgtgagg |
308 |
Q |
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|
||||||||||||||||||||||| |||||||||| || | | ||| || ||||||||||| ||||||||||||| ||||||||||||||||||||| | |
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| T |
6969783 |
agagagaaggttgaattggctacaaagtttggagccaaatatactgaagggaaatttgagatttgtggtgatccagcttatgtgagagaagcttgtgaag |
6969684 |
T |
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| Q |
309 |
gtagcttgaagagacttgatattgattgtattgatctctattatcaacatcgtatt |
364 |
Q |
| |
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||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
6969683 |
ctagcttgaagagacttgatattgattgcatcgatctctattatcaacatcgtatt |
6969628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 6918134 - 6918176
Alignment:
| Q |
12 |
atggacatcacaccaatgaagttcttcttggaaaggttaccac |
54 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6918134 |
atggacctcacaccaatgaagttcttcttggaaaggttaccac |
6918176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 6918533 - 6918498
Alignment:
| Q |
19 |
tcacaccaatgaagttcttcttggaaaggttaccac |
54 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
6918533 |
tcacaccaatgaagttcttcttggaaaggttaccac |
6918498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 6922716 - 6922681
Alignment:
| Q |
19 |
tcacaccaatgaagttcttcttggaaaggttaccac |
54 |
Q |
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|
|||||||||||||||||||||||||||||||||||| |
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| T |
6922716 |
tcacaccaatgaagttcttcttggaaaggttaccac |
6922681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 6923614 - 6923649
Alignment:
| Q |
19 |
tcacaccaatgaagttcttcttggaaaggttaccac |
54 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
6923614 |
tcacaccaatgaagttcttcttggaaaggttaccac |
6923649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 6955496 - 6955531
Alignment:
| Q |
19 |
tcacaccaatgaagttcttcttggaaaggttaccac |
54 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
6955496 |
tcacaccaatgaagttcttcttggaaaggttaccac |
6955531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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