View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8773_low_5 (Length: 338)
Name: NF8773_low_5
Description: NF8773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8773_low_5 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 42189239 - 42189553
Alignment:
| Q |
18 |
taccatcacagatccaggtggttgggactgaatagccagatatgtagggccaccgcctcgaccaatactgcctccgcggccatggaacagtgtaacttta |
117 |
Q |
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| T |
42189239 |
taccatcacagatccaggtggttgggactgaatagccagatatgtagggccaccgcctcgaccaatactgcctccgcggccatggaacagtgtaacttta |
42189338 |
T |
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| Q |
118 |
ataccataatcattgcaagcagctacaacatcctcctgagctttgtaaagttcccaagcagcagtgaagcggccagcatctttaccagaatcagaatatc |
217 |
Q |
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| T |
42189339 |
ataccataatcattgcaagcagctacaacatcctcctgagctttgtaaagttcccaagcagcagtgaagcggccagcatctttaccagaatcagaatatc |
42189438 |
T |
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| Q |
218 |
caaccataacctgcacatacaaatttataataccataacatgaatttcacataataaccataacataaaa--ttaaatgaatttcggatt-aaaaaggca |
314 |
Q |
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| T |
42189439 |
caaccataacctgcacatacaaatttataataccataacatgaatttcacataatagccataacataaaaattaaaatgaatttcggattaaaaaaggca |
42189538 |
T |
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| Q |
315 |
cctcttgatgtccat |
329 |
Q |
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| T |
42189539 |
cctcttgatgtccat |
42189553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 339841 - 339628
Alignment:
| Q |
19 |
accatcacagatccaggtggttgggactgaatagccagatatgtagggccaccgcctcgaccaatactgcctccgcggccatggaacagtgtaactttaa |
118 |
Q |
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| T |
339841 |
accattacagagccaggtggctgggactgaatagccagataagttgggcctccgccacgaccaacactccctccacggccatggaataaagtaaccttaa |
339742 |
T |
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| Q |
119 |
taccataatcattgcaagcagctacaacatcctcctgagctttgtaaagttcccaagcagcagtgaagcggccagcatctttaccagaatcagaatatcc |
218 |
Q |
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| T |
339741 |
taccgtactctttgcaagcagccactacatcctcttgagctttgtaaagttcccaagcagcggtaaagcgcccagcatctttaccagaatcagaataccc |
339642 |
T |
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| Q |
219 |
aaccataacctgca |
232 |
Q |
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| T |
339641 |
aaccattacctgca |
339628 |
T |
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