View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8774_low_1 (Length: 572)
Name: NF8774_low_1
Description: NF8774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8774_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 556
Target Start/End: Complemental strand, 33549802 - 33549237
Alignment:
| Q |
1 |
tcaccaacttagaaatgagaatgttcgtagaacttttaaatattgctatcaataataagtaactttctcgtatatatgtgcgcgcg--tgcgtgcttgcg |
98 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
33549802 |
tcaccaacttagaaatgagaatgttcctagaacttttaaatattgctaccaattataagtaactttctcgtatatatgtgcgcgcgcgtgcgtgcatgcg |
33549703 |
T |
|
| Q |
99 |
tgttgcttattnnnnnnnnntagacatgagttggtaggttggtggatggtttggtatttaatactactagtccattactaattatacatatgaaatctga |
198 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||| |
|
|
| T |
33549702 |
tgttgcttattaaaaaaaagtagacatgagttggtaggttggtggatggtttggtatttaatactactagtccactactgatcatacatatgaaatctga |
33549603 |
T |
|
| Q |
199 |
aacatttcttaaattatcaaagcattgctttttgaaatgcaccctaaactattcaaaaagtaacttatcaaaacacttttgacaattaccaaaaaactaa |
298 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33549602 |
aacatttcttaaattatcaaaacattgctttttgaaattcaccctaaactattcaataagtaacttatcaaaacacttttgacaattaccaaaaaactaa |
33549503 |
T |
|
| Q |
299 |
ggagattggaatgaatatttcaaaatttgtcaacccatttnnnnnnnnnga-----gatagattaatctgaagtttattatactttccaaagcattaaca |
393 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33549502 |
gcagattggaacgaatatttcaaaatttgtcaacctatttaaaaataaaaataaaagatagattaatctgaagtttattatactttccaaagcattaaca |
33549403 |
T |
|
| Q |
394 |
ccaaaagatgtcaattttctcaatgtaacatggtttcttcccacggatcaagtcaacaacctcaagagaagtaagtatgtcaaggacaactccaatgaaa |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33549402 |
ccaaaagatgtcaattttctcaatgtaacatggtttcttcccacggatcaagtcaacaacctcaagagaagtaagtatgtcaaggacaactccaatgaaa |
33549303 |
T |
|
| Q |
494 |
gcacatatgctctagtgtgcatttaataaaagtcta---tggtttctttcaactaatgagttttgt |
556 |
Q |
| |
|
||||| |||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
33549302 |
gcacagatgctctagtgtacatttaataaatgtctatggtggtttctttcaactaatgagttttgt |
33549237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 278 - 556
Target Start/End: Original strand, 33353885 - 33354164
Alignment:
| Q |
278 |
tgacaattaccaaaaaactaaggagattggaatgaatatttcaaaatttgtcaacccatttnnnnnnnnn-gagatagattaatctgaagtttattatac |
376 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
33353885 |
tgaccattaccaaaaaactaagcagattggaatgaatatttcaaaatttgtcgacccatttaaaaaaaaaagagatagatcaatctgaagtttattatac |
33353984 |
T |
|
| Q |
377 |
tttccaaagcattaacaccaaaagatgtcaattttctcaatgtaacatggtttcttcccacggatcaagtcaacaacctcaagagaagtaagtatgtcaa |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33353985 |
tttccaaagcattaacaccaaaagatgtcaattttctcaatgtaacatggtttcttcccacggatcaagtcaacaacctcaagagaagtgagtatgtcaa |
33354084 |
T |
|
| Q |
477 |
ggacaactccaatgaaagcacatatgctctagtgtgcatttaataaaagtctatggtttctttcaactaatgagttttgt |
556 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
33354085 |
ggacaactccaatgaaagcatagatgctctagtgtgcatttaataaatgtctatggtttctttcaactattgagttttgt |
33354164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 33547791 - 33547696
Alignment:
| Q |
119 |
tagacatgagttggtaggttggtggatggtttggtatttaatactactagtccattactaattatacatatgaaatctgaaacatttcttaaatta |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
33547791 |
tagacatgagttggtaggttggtggatggtttggtatttaatactactagtccactactaatcatacatatgaaatttgaaacatttcttaaatta |
33547696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 33355611 - 33355662
Alignment:
| Q |
119 |
tagacatgagttggtaggttggtggatggtttggtatttaatactactagtc |
170 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33355611 |
tagacatgagttggtaggttggtggatggtttgatatttaatactactagtc |
33355662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 33543978 - 33543927
Alignment:
| Q |
119 |
tagacatgagttggtaggttggtggatggtttggtatttaatactactagtc |
170 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
33543978 |
tagacatgagttggtaggtttgtggatggtttgatatttaatactactagtc |
33543927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 427 - 495
Target Start/End: Complemental strand, 41932485 - 41932417
Alignment:
| Q |
427 |
tttcttcccacggatcaagtcaacaacctcaagagaagtaagtatgtcaaggacaactccaatgaaagc |
495 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| |||||| ||| |||||||||||||| |||||||||| |
|
|
| T |
41932485 |
tttcttcccacgtatcaagtcaataacctcaggagaagcaagcctgtcaaggacaacttcaatgaaagc |
41932417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 427 - 496
Target Start/End: Original strand, 4315435 - 4315504
Alignment:
| Q |
427 |
tttcttcccacggatcaagtcaacaacctcaagagaagtaagtatgtcaaggacaactccaatgaaagca |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||| ||||||||||| |
|
|
| T |
4315435 |
tttcttcccacggatcaagtcaacaacctcaggagaagaaagcttgtcaaggacaacttcaatgaaagca |
4315504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 427 - 495
Target Start/End: Original strand, 4306573 - 4306641
Alignment:
| Q |
427 |
tttcttcccacggatcaagtcaacaacctcaagagaagtaagtatgtcaaggacaactccaatgaaagc |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||| |||| ||||||||| |||||||||| |
|
|
| T |
4306573 |
tttcttcccacggatcaagtcaacaacctcaggagaagcaagcctgtcgaggacaacttcaatgaaagc |
4306641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 427 - 496
Target Start/End: Complemental strand, 4253065 - 4252996
Alignment:
| Q |
427 |
tttcttcccacggatcaagtcaacaacctcaagagaagtaagtatgtcaaggacaactccaatgaaagca |
496 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||| || |||| ||||||||| ||||||||||| |
|
|
| T |
4253065 |
tttcttcccacggatcaagacaacaacctcaggagaagcgagcctgtcgaggacaacttcaatgaaagca |
4252996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 289 - 338
Target Start/End: Original strand, 39386437 - 39386486
Alignment:
| Q |
289 |
aaaaaactaaggagattggaatgaatatttcaaaatttgtcaacccattt |
338 |
Q |
| |
|
||||||||||| |||||| | |||||||||||||||||||||| |||||| |
|
|
| T |
39386437 |
aaaaaactaagcagattgaactgaatatttcaaaatttgtcaaaccattt |
39386486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University