View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8774_low_3 (Length: 425)
Name: NF8774_low_3
Description: NF8774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8774_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 20 - 416
Target Start/End: Original strand, 52035775 - 52036167
Alignment:
| Q |
20 |
atgatatacattgtcgggagagaacttattatctgtgaagcttctacaatattagtatttgtcaacaaaataattcgaagtaattgacannnnnnnatag |
119 |
Q |
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| T |
52035775 |
atgatatacattgtcgggagagaacttattatctgtgaagcttctacaatattagtatttgtaaacaaaataattcgaagtaattgatatttttt-atac |
52035873 |
T |
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| Q |
120 |
gtgttcttgcaagttgtttggataattgatgaaaagaatgaatgaaaaatgtaagaggatggaattgataaaccactcaatagattacattaaccattat |
219 |
Q |
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| T |
52035874 |
gtgttcttgcaagttgtttggataattgatgaaaagaatgaatgaaaaatgtaagaggatggaattgataaaccactcaatagattacattaaccatt-- |
52035971 |
T |
|
| Q |
220 |
ttaaccgttttctgtgggaacaggggatgcctcaacattaggcaaggcaactactgttgttagtctgtttgagattctatacagcaagtaaacaataatt |
319 |
Q |
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| T |
52035972 |
-taaccgttttctgtgggaacaggggatgcctcaacataaggcaaggcaactactgttgttagtctgtttgagattctatacaacaagtaaacaataatt |
52036070 |
T |
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| Q |
320 |
gcgaatgctaattaagttcacaacaacgagcaattgcatttattccatttaataagaatctctattggtgttgcacaaattcactatacacaggttc |
416 |
Q |
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| T |
52036071 |
gcgaatgctaattaagttcacaacaacgaccaattgcatttattccatttaataagaatctctattggtgttgcacaaattcactatacacaggttc |
52036167 |
T |
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