View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8774_low_5 (Length: 278)
Name: NF8774_low_5
Description: NF8774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8774_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 1718037 - 1717785
Alignment:
| Q |
18 |
ttgagcatagtgggacaagagatggatatacagaatggggttattcatacattcctcagacagtctctgtcatagaattcttagcaaaaaggttttgtat |
117 |
Q |
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| T |
1718037 |
ttgagcatagtgggacaagagatggatatacagaatggggttattcatacattcctcagacagtctctgtcatagaattcttagcaaaaaggttttgtat |
1717938 |
T |
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| Q |
118 |
ctatatatctaaaatttattcatatattcctgaaacagaatgttaagaacactctcttactaacacnnnnnnnaacatttaccctcgtattagatgaaat |
217 |
Q |
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| T |
1717937 |
ctatatatctaaaatttattcatatattcctcaggcagaatgttaagaacactctcttactaatactttttctaacactcactctcgtattagatgaaat |
1717838 |
T |
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| Q |
218 |
ccatataaatctcaccactttatgtgtgatccatttccaatatttgatgtcca |
270 |
Q |
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| T |
1717837 |
ctatatggatctcaccactttatgtatgatccatttccaatatttgatatcca |
1717785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 1739507 - 1739395
Alignment:
| Q |
18 |
ttgagcatagtgggacaagagatggatatacagaatggggttattcatacattcctcagacagtctctgtcatagaattcttagcaaaaaggttttgtat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
1739507 |
ttgagcatagtgggacaagagatggatatacagaatgggatgattcatacattccacagacagtctctgtcatagagttcttagcaaaaaggttatgtat |
1739408 |
T |
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| Q |
118 |
ctatatatctaaa |
130 |
Q |
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| T |
1739407 |
ctatatatctaaa |
1739395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 1749351 - 1749254
Alignment:
| Q |
23 |
catagtgggacaagagatggatatacagaatggggttattcatacattcctcagacagtctctgtcatagaattcttagcaaaaaggttttgtatcta |
120 |
Q |
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| T |
1749351 |
catagtggaacaagagatggatatacagaatggggtgattcttacatacctcagacagtagctgtgattgatttcttagcacaaaggttttgtatcta |
1749254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 1754963 - 1754877
Alignment:
| Q |
26 |
agtgggacaagagatggatatacagaatggggttattcatacattcctcagacagtctctgtcatagaattcttagcaaaaaggttt |
112 |
Q |
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||||| ||||||||||||| || |||||||||| | |||||||| ||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
1754963 |
agtggaacaagagatggatttatagaatggggtgaatcatacatacctcagacagtctctgtcatagatttcctagcaaaaaggttt |
1754877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 259
Target Start/End: Complemental strand, 54140844 - 54140812
Alignment:
| Q |
227 |
tctcaccactttatgtgtgatccatttccaata |
259 |
Q |
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||||||||||||||||| ||||||||||||||| |
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| T |
54140844 |
tctcaccactttatgtgggatccatttccaata |
54140812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 47822091 - 47822059
Alignment:
| Q |
226 |
atctcaccactttatgtgtgatccatttccaat |
258 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
47822091 |
atctcaccactttatgtgggatccatttccaat |
47822059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 51475233 - 51475265
Alignment:
| Q |
226 |
atctcaccactttatgtgtgatccatttccaat |
258 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
51475233 |
atctcaccactttatgtgggatccatttccaat |
51475265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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