View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8774_low_6 (Length: 274)
Name: NF8774_low_6
Description: NF8774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8774_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 1717687 - 1717421
Alignment:
| Q |
1 |
aagattcactctccttatttaaaactttgttaaccaattgaattacctactcgaagctgatttctttatacatgaattgaacttgtttacagatacagtc |
100 |
Q |
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| T |
1717687 |
aagattcactctccttatttaaaactttgttaaccaaatgaattacctactcgaaactgatttctttatacatgaattgaacttgtttacagatacagtc |
1717588 |
T |
|
| Q |
101 |
atagaaaaagtttaggaggaatagagctgatgaataagccactaggtgtcaatctagatagcctgaagaactattacagggaagcttatgatgttgtgag |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1717587 |
atagaaaaagtttaggaggaatagagctgatgaatgagccactaggtgtcaatctagatagcttgaagaactattacagggaagcttatgatgttgtgag |
1717488 |
T |
|
| Q |
201 |
gaaatacatcccaaatacttatgtgatcatgtcaaatccattggccacagattctaaacttcttctc |
267 |
Q |
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| T |
1717487 |
gaaatacatcccaaatacttatgtgatcatgtcaaatccattggccacagattctaaacttcttctc |
1717421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 21 - 267
Target Start/End: Complemental strand, 1739164 - 1738918
Alignment:
| Q |
21 |
aaaactttgttaaccaattgaattacctactcgaagctgatttctttatacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggagga |
120 |
Q |
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||||||| ||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | | |||||||||||||||||||| |
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| T |
1739164 |
aaaacttagttcaccaaatgaattacctactcgaaactgatatctttatacatgaattgaacttgtttacagatataataatagaaaaagtttaggagga |
1739065 |
T |
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| Q |
121 |
atagagctgatgaataagccactaggtgtcaatctagatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatactt |
220 |
Q |
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| T |
1739064 |
atagagctgatgaatgagccacttggtgtcaatcaagatagcctcaagaactattacaagttagcttatgatgttgtgaggaaatacatcccaaatactt |
1738965 |
T |
|
| Q |
221 |
atgtgatcatgtcaaatccattggccacagattctaaacttcttctc |
267 |
Q |
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|||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
1738964 |
atgtgatcatgtcaaacccattggccacagattccaaacttcttctc |
1738918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 57 - 267
Target Start/End: Complemental strand, 1754300 - 1754089
Alignment:
| Q |
57 |
ctgatttcttt-atacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggaggaatagagctgatgaataagccactaggtgtcaatct |
155 |
Q |
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||||||||||| |||| ||||||||| |||| |||| || || ||||| ||||||||||||||||||| |||||||| |||||| |||||||||||| |
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| T |
1754300 |
ctgatttctttgatacttgaattgaatttgtggacaggtatggtaatagaccaagtttaggaggaatagagttgatgaatgagccacaaggtgtcaatct |
1754201 |
T |
|
| Q |
156 |
agatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatacttatgtgatcatgtcaaatccattggccacagattct |
255 |
Q |
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||||||||| ||||| ||||||| ||| |||||||||| ||||||||||||| |||||| |||||||||| |||||||| ||||||| |||||||| |
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| T |
1754200 |
agatagcctcaagaaatattacaaggaggcttatgatgcagtgaggaaatacaatccaaatgcttatgtgataatgtcaaacccattggatgcagattct |
1754101 |
T |
|
| Q |
256 |
aaacttcttctc |
267 |
Q |
| |
|
||| | |||||| |
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|
| T |
1754100 |
aaagtacttctc |
1754089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 108 - 244
Target Start/End: Complemental strand, 1748932 - 1748796
Alignment:
| Q |
108 |
aagtttaggaggaatagagctgatgaataagccactaggtgtcaatctagatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatac |
207 |
Q |
| |
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|||||||||||||||||||||||||||| |||||| |||||||||||| ||||| || ||||| ||||||| || ||||||||||| |||||| |||||| |
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| T |
1748932 |
aagtttaggaggaatagagctgatgaatgagccacaaggtgtcaatcttgatagtctcaagaagtattacaaggcagcttatgatgctgtgagaaaatac |
1748833 |
T |
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| Q |
208 |
atcccaaatacttatgtgatcatgtcaaatccattgg |
244 |
Q |
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| T |
1748832 |
aacccagaggcttatgtgatcatgtcaaatccattgg |
1748796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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