View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8775_high_2 (Length: 204)

Name: NF8775_high_2
Description: NF8775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8775_high_2
NF8775_high_2
[»] scaffold0019 (1 HSPs)
scaffold0019 (25-137)||(23615-23727)
[»] chr8 (5 HSPs)
chr8 (25-102)||(17974051-17974128)
chr8 (25-102)||(20725670-20725747)
chr8 (25-102)||(20738568-20738645)
chr8 (25-111)||(20746857-20746943)
chr8 (25-82)||(20733611-20733668)
[»] chr5 (1 HSPs)
chr5 (25-102)||(22961437-22961514)
[»] chr1 (1 HSPs)
chr1 (25-110)||(45497278-45497363)
[»] scaffold0002 (1 HSPs)
scaffold0002 (25-102)||(121707-121784)
[»] chr6 (2 HSPs)
chr6 (25-102)||(13826181-13826258)
chr6 (28-107)||(14474073-14474152)
[»] scaffold1904 (1 HSPs)
scaffold1904 (28-85)||(36-93)
[»] scaffold1312 (1 HSPs)
scaffold1312 (28-85)||(2018-2075)
[»] chr7 (1 HSPs)
chr7 (25-102)||(12662362-12662439)
[»] chr3 (9 HSPs)
chr3 (28-85)||(4434096-4434153)
chr3 (28-85)||(4454891-4454948)
chr3 (25-102)||(30068232-30068309)
chr3 (25-85)||(18887794-18887854)
chr3 (25-85)||(18892021-18892081)
chr3 (25-85)||(18902204-18902264)
chr3 (28-102)||(40999552-40999626)
chr3 (28-102)||(41008335-41008409)
chr3 (28-102)||(27552461-27552535)


Alignment Details
Target: scaffold0019 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 23727 - 23615
Alignment:
Q  25 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaattgaggacgagatttttacaga 124  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||  ||||||| ||||||| ||||    
T  23727 aagccacttcatggtcctttaatctatttccttttaagaatttgtatcagcctttaaaagaaaaagaggaaatcagaaccgaggacgggatttttccaga 23628  T
Q  125 agcaaaaaacatc 137  Q
    |||||||||||||    
T  23627 agcaaaaaacatc 23615  T

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Target: chr8 (Bit Score: 66; Significance: 2e-29; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 17974051 - 17974128
Alignment:
Q  25 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaa 102  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  17974051 aagccaattcatggtcctttaatctatttccttttaagaatttgtatcagcctttaaaagaaaaagaggaaatcagaa 17974128  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 20725670 - 20725747
Alignment:
Q  25 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaa 102  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||| ||||    
T  20725670 aagccaattcatggtcctttaatctatttccttttaagaatttgtatcagcctttaaaagaaagagaggaaatcagaa 20725747  T

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Target: chr8; HSP #3
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 20738568 - 20738645
Alignment:
Q  25 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaa 102  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||| ||||    
T  20738568 aagccaattcatggtcctttaatctatttccttttaagaatttgtatcagcctttaaaagaaagagaggaaatcagaa 20738645  T

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Target: chr8; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 20746857 - 20746943
Alignment:
Q  25 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaattgaggacg 111  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| | ||||||||| |||| || |||||    
T  20746857 aagccaattcatggtcctttaatctatttccttttaagaatttgtatcaacctttaaaagaaagagaggaaatcagaactggggacg 20746943  T

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Target: chr8; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 20733611 - 20733668
Alignment:
Q  25 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaa 82  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  20733611 aagccaattcatggtcctttaatctatttccttttaagaatttgtatcagcctttaaa 20733668  T

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Target: chr5 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 22961514 - 22961437
Alignment:
Q  25 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaa 102  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  22961514 aagccaattcatggtcctttaatctatttccttttaagaatttgtatcagcctttaaaagaaaaagaggaaatcagaa 22961437  T

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Target: chr1 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 45497278 - 45497363
Alignment:
Q  25 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaattgaggac 110  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||| |||| |||||||    
T  45497278 aagccaattcatggtcctttaatctatttccttttaagaatttgcatcagcctttaaaagaaaaagaggaaatcagaactgaggac 45497363  T

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Target: scaffold0002 (Bit Score: 62; Significance: 5e-27; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 121707 - 121784
Alignment:
Q  25 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaa 102  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||| ||||    
T  121707 aagccaattcatggtcctttaatctatttccttttaagaatttgtgtcagcctttaaaagaaaaagaggaaatcagaa 121784  T

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Target: chr6 (Bit Score: 62; Significance: 5e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 13826181 - 13826258
Alignment:
Q  25 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaa 102  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  13826181 aagccaattcatggtcctttaatttatttccttttaagaatttgtatcagcctttaaaagaaaaagaggaaatcagaa 13826258  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 14474073 - 14474152
Alignment:
Q  28 ccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaattgag 107  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| | ||||||||| |||| ||||    
T  14474073 ccaattcatggtcctttaatctatttccttttaagaatttgtttcagcctttaaaagaaagagaggaaatcagaagtgag 14474152  T

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Target: scaffold1904 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold1904
Description:

Target: scaffold1904; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 36 - 93
Alignment:
Q  28 ccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaaga 85  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36 ccaattcatggtcctttaatctatttccttttaagaatttgtatcagcctttaaaaga 93  T

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Target: scaffold1312 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold1312
Description:

Target: scaffold1312; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 2018 - 2075
Alignment:
Q  28 ccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaaga 85  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2018 ccaattcatggtcctttaatctatttccttttaagaatttgtatcagcctttaaaaga 2075  T

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Target: chr7 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 12662362 - 12662439
Alignment:
Q  25 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaa 102  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||   ||||||||| ||||    
T  12662362 aagccaattcatggtcctttaatctatttccttttaagaatttgtattagcctttaaaagaaggagaggaaatcagaa 12662439  T

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Target: chr3 (Bit Score: 54; Significance: 3e-22; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 4434096 - 4434153
Alignment:
Q  28 ccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaaga 85  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4434096 ccaattcatggtcctttaatctatttccttttaagaatttgtatcagcctttaaaaga 4434153  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 4454891 - 4454948
Alignment:
Q  28 ccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaaga 85  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4454891 ccaattcatggtcctttaatctatttccttttaagaatttgtatcagcctttaaaaga 4454948  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 30068309 - 30068232
Alignment:
Q  25 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaa 102  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| | ||||||||| ||||    
T  30068309 aagccgattcatggtcctttaatctatttccttttaagaatttgtattagcctttaaaagaaagagaggaaatcagaa 30068232  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 18887854 - 18887794
Alignment:
Q  25 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaaga 85  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  18887854 aagccaattcatggtcctttgatctatttccttttaagaatttgtatcagcctttaaaaga 18887794  T

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Target: chr3; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 18892081 - 18892021
Alignment:
Q  25 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaaga 85  Q
    |||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||    
T  18892081 aagccaattcatggtcttttgatctatttccttttaagaatttgtatcagcctttaaaaga 18892021  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 18902264 - 18902204
Alignment:
Q  25 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaaga 85  Q
    |||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||    
T  18902264 aagccaattcatggtcttttgatctatttccttttaagaatttgtatcagcctttaaaaga 18902204  T

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Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 40999552 - 40999626
Alignment:
Q  28 ccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaa 102  Q
    |||||||||||||||||||||||||| ||||||||||||||| | || ||||||||||   ||||||||| ||||    
T  40999552 ccaattcatggtcctttaatctatttccttttaagaatttgttttagtctttaaaagaaggagaggaaatcagaa 40999626  T

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Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 41008335 - 41008409
Alignment:
Q  28 ccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaa 102  Q
    |||||||||||||||||||||||||| ||||||||||||||| | || ||||||||||   ||||||||| ||||    
T  41008335 ccaattcatggtcctttaatctatttccttttaagaatttgttttagtctttaaaagaaggagaggaaatcagaa 41008409  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 27552535 - 27552461
Alignment:
Q  28 ccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaa 102  Q
    |||||||||||||||||||||||||| ||||||||||||||| | || |||| |||||   ||||||||| ||||    
T  27552535 ccaattcatggtcctttaatctatttccttttaagaatttgttttagtctttgaaagaaggagaggaaatcagaa 27552461  T

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