View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8775_low_2 (Length: 340)
Name: NF8775_low_2
Description: NF8775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8775_low_2 |
 | |
|
| [»] scaffold0070 (1 HSPs) |
| | |
|
| [»] scaffold0060 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 41313778 - 41313452
Alignment:
| Q |
1 |
ttaatttagtcggatactcattgtgagtggtctattttgtggagttaataagcaggtgtcgcatgcatacattcattgtcgcgtggtgccgataattggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41313778 |
ttaatttagtcggatactcattgtgagtggtctattttgtggagttaataagcaggtgtcgcatgcatacattcattgtcgcgtggtgctcataattggt |
41313679 |
T |
|
| Q |
101 |
tcggacccgaagtcttgagtgcccataattggttggggcttattgtttccttttgagtgctcataattggttgaggctcgttgtc-ttcttttggtgccc |
199 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41313678 |
tgggacccgaagtcttgagtgcccataattggttggggcttattgtttccttttgagtgctcataattggttgaggctcgttgtctttcttttggtgccc |
41313579 |
T |
|
| Q |
200 |
ataattggttgggacccgtggggtatgtggtgtccataattggttggagtcacggtggagtgttcataattggttgaagcccacaaatatctacgaagaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41313578 |
ataattggttgggacccgtggggtatgtggtgtccataattggttggagtcatggtggagtgttcataattggttgaagcccacaaatatctacgaagaa |
41313479 |
T |
|
| Q |
300 |
cttttgttgccctataagggaggtgat |
326 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
41313478 |
cttttgttgccctataagggaggtgat |
41313452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 2188157 - 2188474
Alignment:
| Q |
1 |
ttaatttagtcggatactcattgtgagtggtctattttgtggagttaataagcaggtgtcgcatgcatacattcattgtcgcgtggtgccgataattggt |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2188157 |
ttaattaagtcggatactcattgtgagtggtctattttgtggagttaataagcaggtgtcgcatgcatacattcattgtcgcgtggtgctcataattggt |
2188256 |
T |
|
| Q |
101 |
tcggacccgaagtcttgagtgcccataattggttggggcttattgtttccttttgagtgctcataattggttgaggctcgttgtcttcttttggtgccca |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2188257 |
tgggacccgaagtcttgagtgcccataattggttggggcttattgtttccttttgagtgctcataattggttgaggctcgttgtcttcttttggtgccca |
2188356 |
T |
|
| Q |
201 |
taattggttgggacccgtggggtatgtggtgtccataattggttggagtcacggtggagtgttcataattggttgaagcccacaaatatctacgaagaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2188357 |
taattggttgggacccgtggggtatgtggtgtccataattggttggagtcacggtggagtgttcataattggttgaagcccacaaatatctacgaagaac |
2188456 |
T |
|
| Q |
301 |
ttttgttgccctataagg |
318 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
2188457 |
ttttgttgccctataagg |
2188474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 19632747 - 19632418
Alignment:
| Q |
1 |
ttaatttagtcggatactcattgtgagtggtctattttgtggagttaataagcaggtgtcgcatgcatacattcattgtcgcgtggtgccgataattggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
19632747 |
ttaatttagtcggatactcattgtgagtggtctattttgtggagttaataagcaggtgtcgcatgcatacattcagtgtcgcgtggtgctcataattggt |
19632648 |
T |
|
| Q |
101 |
tcggacccgaagtcttgagtgcccataattggttggggcttattgtttccttttgagtgctcataattggttgaggctcgttgtcttcttttggtgccca |
200 |
Q |
| |
|
| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19632647 |
tgggacccgaagtcttgagtgcc-ataattggttggggcttattgtttccttttgagtgctcataattggttgaggcttgttgtcttcttttggtgccca |
19632549 |
T |
|
| Q |
201 |
taattggttgggacccgtggggtatgtggtgtccataattggttggagtcacggtggagtgttcataattggttgaagcccacaaatatctacgaagaac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
19632548 |
taattggttgggacccgtggggtatgtggtgtccataattgtttggagccatggtggagtgttcataattggttgaagcccacaattatctacgaagaac |
19632449 |
T |
|
| Q |
301 |
ttttgttgccctataagggaggtgatgtcca |
331 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |
|
|
| T |
19632448 |
ttttgttgccctataagggaggtgatatcca |
19632418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 1608657 - 1608331
Alignment:
| Q |
1 |
ttaatttagtcggatactcattgtgagtggtctattttgtggagttaataagcaggtgtcgcatgcatacattcattgtcgcgtggtgccgataattggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
1608657 |
ttaatttagtcggatactcattgtgagtggtctatcttgtggagttaataagcaggtgtcgcatgcatacattcatggtcgcgtggtgcccataattggt |
1608558 |
T |
|
| Q |
101 |
tcggacccgaagtcttgagtgcccataattggttggggcttattgtttccttttgagtgctcataattggttgaggctcgttgtcttcttttggtgccca |
200 |
Q |
| |
|
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
1608557 |
tgggaccctaagtcttgagtgcccataattggttggggcttattgtttccttttgagtgctcataattggttgaggctctttgatttcttttggtgccca |
1608458 |
T |
|
| Q |
201 |
taattggttgggacccgtggggtatgtggtgtccataattggttggagtcacggtggagtgttcataattggttgaagcccacaaatatctacgaagaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1608457 |
taattggttgggacccgtggggtatgtggtgtccataattggttggagctacggtggagtgttcataattggttgaagctcacaaatatctacgaagaaa |
1608358 |
T |
|
| Q |
301 |
ttttgttgccc-tataagggaggtgat |
326 |
Q |
| |
|
||||||||||| | ||||||||||||| |
|
|
| T |
1608357 |
ttttgttgcccttttaagggaggtgat |
1608331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 231 - 326
Target Start/End: Complemental strand, 20537039 - 20536944
Alignment:
| Q |
231 |
gtccataattggttggagtcacggtggagtgttcataattggttgaagcccacaaatatctacgaagaacttttgttgccctataagggaggtgat |
326 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
20537039 |
gtccataattggttggagctacggtggagtgttcataattggttgaagctcacaaatatctacgaagaacttttgttgccctttaagggaggtgat |
20536944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 19215803 - 19216128
Alignment:
| Q |
1 |
ttaatttagtcggatactcattgtgagtggtctattttgtggagttaataagcaggtgtcgcatgcatacattcattgtcgcgtggtgccgataattggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
19215803 |
ttaatttagtcggatactcattgtgagtggcctattttgtggagttaataagcaggtgttgcatgcatacattcattgtcgcatggtgcccataattggt |
19215902 |
T |
|
| Q |
101 |
tcggacccgaagtcttgagtgcccataattggttggggcttattgtttccttttgagtgctcataattggttgaggctcgttgtcttcttttggtgccca |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19215903 |
tgggacccgaagtcttgagtgcccataattggttggggcttattgtttccttttgagtgctcataattggtttaggctcgttgtcttcttttggtgccca |
19216002 |
T |
|
| Q |
201 |
taattggttgggacccgtggggtatgtggtgtccataattggttggagtcacggtggagtgttcataattggttgaagcccacaaatatctacgaagaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19216003 |
taattggttgggacccgtggggtatgtggtgtccataattggttggagtcacggtggagtgttcataattggttgaagcccacaaatatctacgaagaac |
19216102 |
T |
|
| Q |
301 |
ttttgttgccctataagggaggtgat |
326 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
19216103 |
ttttgttgccctataagggaggtgat |
19216128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 115 - 281
Target Start/End: Original strand, 10998966 - 10999128
Alignment:
| Q |
115 |
ttgagtgcccataattggttggggcttattgtttccttttgagtgctcataattggttgaggctcgttgtcttcttttggtgcccataattggttgggac |
214 |
Q |
| |
|
||||||| ||||||||||||| | ||||| |||||||||||| |||||||||| ||| || ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10998966 |
ttgagtgtccataattggttgtgacttatcatttccttttgagagctcataattagtttagaatcgtt---ttcttttggtgcccataattggttgggac |
10999062 |
T |
|
| Q |
215 |
ccgtggggtatgtggtgtccataattggttggagtcacggtggagtgttcataattggttgaagccc |
281 |
Q |
| |
|
||| || |||| || ||| ||||| ||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
10999063 |
ccg-ggagtatatgatgttcataactggttggagctacgatggagtgttcataattggttgaagccc |
10999128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 19589545 - 19589736
Alignment:
| Q |
1 |
ttaatttagtcggatactcattgtgagtggtctattttg-tggagttaat-aagcaggtgtcgcatgcatacattcattgtcgcgtggtgccgataattg |
98 |
Q |
| |
|
|||||||||| ||||||||| ||| | || |||||||| |||||||||| || || || | |||||||| |||||| |||| ||| |||| ||||||| |
|
|
| T |
19589545 |
ttaatttagttggatactcagtgtaattgatctatttttatggagttaattaaccatgtattacatgcatatattcatcgtcgtgtgctgcccataattg |
19589644 |
T |
|
| Q |
99 |
gttcggacccgaagtcttgagtgcccataattggttggggcttattgtttccttttgagtgctcataattggttgaggctcgttgtcttctt |
190 |
Q |
| |
|
||| | |||| ||||||||||||||| ||||||||||||| || | |||| ||||||||| ||||||||||||||| |||||||| ||||| |
|
|
| T |
19589645 |
gttggaaccctaagtcttgagtgcccgtaattggttggggtttgtcgttttgttttgagtgttcataattggttgagactcgttgttttctt |
19589736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 19591311 - 19591378
Alignment:
| Q |
259 |
gtgttcataattggttgaagcccacaaatatctacgaagaacttttgttgccctataagggaggtgat |
326 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| || || |||||||||| |||||| ||||| |
|
|
| T |
19591311 |
gtgttcataattggttaaagcccacaaatatctacgaaaaatttatgttgccctaaaagggatgtgat |
19591378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 29822930 - 29823254
Alignment:
| Q |
1 |
ttaatttagtcggatactcattgtgagtggtctattttgtggagttaataagcaggtgtcgcatgcatacattcattgtcgcgtggtgccgataattggt |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29822930 |
ttaatttagtcagatactcattgtgagtggtctattttgtggagt-aataagcaggtgtcgcatgcatacattcattgtcgcgtggtgcccataattggt |
29823028 |
T |
|
| Q |
101 |
tcggacccgaagtcttgagtgcccataattggttggggcttattgtttccttttgagtgctcataattggttgaggctcgttgtcttcttttggtgccca |
200 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29823029 |
tgggacccgaagtcttgagcgcccataattggttggggcttattgtttccttttgagtgctcataattggttgaggctcgttgtcttcttttggcgccca |
29823128 |
T |
|
| Q |
201 |
taattggttgggacccgtggggtatgtggtgtccataattggttggagtcacggtggagtgttcataattggttgaagcccacaaatatctacgaagaac |
300 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
29823129 |
taattggatgggacccgtagggtatgtggtgtccataattggttggagccacggtggagtgttcataattggttgaagcccacaattatctacgaagaac |
29823228 |
T |
|
| Q |
301 |
ttttgttgccctataagggaggtgat |
326 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
29823229 |
ttttgttgccctataagggaggtgat |
29823254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 10 - 326
Target Start/End: Complemental strand, 7093976 - 7093660
Alignment:
| Q |
10 |
tcggatactcattgtgagtggtctattttgtggagttaataagcaggtgtcgcatgcatacattcattgtcgcgtggtgccgataattggttcggacccg |
109 |
Q |
| |
|
||||||| ||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||| |
|
|
| T |
7093976 |
tcggatattcattgtgagttgtctatttggtggagttaatatgcaggtgtcgcatgcatacattcattgttgcgtggtgcccataattggttaggacccg |
7093877 |
T |
|
| Q |
110 |
aagtcttgagtgcccataattggttggggcttattgtttccttttgagtgctcataattggttgaggctcgttgtcttcttttggtgcccataattggtt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7093876 |
aagtcttgagtgcccataattggttggggcttattgtttccttgtgagtgctcataattggttgaggctcgttgatttcttttggtgcccataattggtt |
7093777 |
T |
|
| Q |
210 |
gggacccgtggggtatgtggtgtccataattggttggagtcacggtggagtgttcataattggttgaagcccacaaatatctacgaagaacttttgttgc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7093776 |
gggacccgtggggtatgtggtgtccataattggttggagtcacggtggagtgttcataattggttggagcccacaaatatctacgaagaacttttgttgt |
7093677 |
T |
|
| Q |
310 |
cctataagggaggtgat |
326 |
Q |
| |
|
||| |||| |||||||| |
|
|
| T |
7093676 |
cctttaagagaggtgat |
7093660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 10 - 326
Target Start/End: Complemental strand, 7097709 - 7097393
Alignment:
| Q |
10 |
tcggatactcattgtgagtggtctattttgtggagttaataagcaggtgtcgcatgcatacattcattgtcgcgtggtgccgataattggttcggacccg |
109 |
Q |
| |
|
||||||| ||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||| |
|
|
| T |
7097709 |
tcggatattcattgtgagttgtctatttggtggagttaatatgcaggtgtcgcatgcatacattcattgttgcgtggtgcccataattggttaggacccg |
7097610 |
T |
|
| Q |
110 |
aagtcttgagtgcccataattggttggggcttattgtttccttttgagtgctcataattggttgaggctcgttgtcttcttttggtgcccataattggtt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7097609 |
aagtcttgagtgcccataattggttggggcttattgtttccttgtgagtgctcataattggttgaggctcgttgatttcttttggtgcccataattggtt |
7097510 |
T |
|
| Q |
210 |
gggacccgtggggtatgtggtgtccataattggttggagtcacggtggagtgttcataattggttgaagcccacaaatatctacgaagaacttttgttgc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7097509 |
gggacccgtggggtatgtggtgtccataattggttggagtcacggtggagtgttcataattggttggagcccacaaatatctacgaagaacttttgttgt |
7097410 |
T |
|
| Q |
310 |
cctataagggaggtgat |
326 |
Q |
| |
|
||| |||| |||||||| |
|
|
| T |
7097409 |
cctttaagagaggtgat |
7097393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 452150 - 451825
Alignment:
| Q |
1 |
ttaatttagtcggatactcattgtgagtggtctattttgtggagttaataagcaggtgtcgcatgcatacattcattgtcgcgtggtgccgataattggt |
100 |
Q |
| |
|
||||||||||||| |||||||| ||| ||| | ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
452150 |
ttaatttagtcggttactcattaagagcggtgttttttgtggagttaataatcaggtgtcacatgcatacattcattgtcgtgtggtgcccataattggt |
452051 |
T |
|
| Q |
101 |
tcggacccgaagtcttgagtgcccataattggttggggcttattgtttccttttgagtgctcataattggttgaggctcgttgtcttcttttggtgccca |
200 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||| |
|
|
| T |
452050 |
tgggacccgaagtcttgagtgcccataattggttggggcttattgtttccttttgagtgctcataattggttgggactcgttgatttcttttggtgccca |
451951 |
T |
|
| Q |
201 |
taattggttgggacccgtggggtatgtggtgtccataattggttggagtcacggtggagtgttcataattggttgaagcccacaaatatctacgaagaac |
300 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
451950 |
taattggttgggacccgtggggaatgtggtgtccataattggttggagctacggtggagtgttcataattggttgaagcttacaaatatctacgaagaac |
451851 |
T |
|
| Q |
301 |
ttttgttgccctataagggaggtgat |
326 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
451850 |
ttttgttgccctataagggaggtgat |
451825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 37627234 - 37626911
Alignment:
| Q |
1 |
ttaatttagtcggatactcattgtgagtggtctattttgtggagttaataagcaggtgtcgcatgcatacattcattgtcgcgtggtgccgataattggt |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
37627234 |
ttaatttagtcgcatactcattgtgagtggtctattt-gtggagttaatatgcaggtgtcgcatgcatacattcattgtcgcttggtgcccataattggt |
37627136 |
T |
|
| Q |
101 |
tcggacccgaagtcttgagtgcccataattggttggggcttattgtttccttttgagtgctcataattggttgaggctcgttgtcttcttttggtgccca |
200 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37627135 |
tgggatccgaagtcttgagtgcccataattggttgaggcttattgtttccttttgagtgctcataattggttgaggctcgt-gtcttcttttggtgccca |
37627037 |
T |
|
| Q |
201 |
taattggttgggacccgtggggtatgtggtgtccataattggttggagtcacggtggagtgttcataattggttgaagcccacaaatatctacgaagaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37627036 |
taattggttgggacccgtggggtatgtggtgtccataattggttggagtcacggtggagtgttcataattggttgaagcccacaaatatctacgaagaac |
37626937 |
T |
|
| Q |
301 |
ttttgttgccctataagggaggtgat |
326 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
37626936 |
ttttgttgccctataagggaggtgat |
37626911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 331
Target Start/End: Complemental strand, 14276130 - 14275806
Alignment:
| Q |
9 |
gtcggatactcattgtgagtggtctattttgtggagttaataagcaggtgtcgcatgcatacattcattgtcgcgtggtgccgataattggttcggaccc |
108 |
Q |
| |
|
||||||||||||||||| ||| |||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
14276130 |
gtcggatactcattgtgtgtgatctattttttggagttaataatcatgtgtcgcatgcatacattcattgtcgcgtggtgcctataattggttgggacct |
14276031 |
T |
|
| Q |
109 |
gaagtcttgagtgcccataattggttggggcttattgtttcctt-ttgagtgctcataattggttgaggctcgttgtcttcttttggtgcccataattgg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
14276030 |
gaagtcttgagtgcccataattggttggggcttatcgtttcttggttgagtgctcataattggttgaggctcgttgttttcttttggtgcccataattag |
14275931 |
T |
|
| Q |
208 |
ttgggacccgtggggtatgtggtgtccataattggttggagtcacggtggagtgttcataattggttgaagcccacaaatatctacgaagaac-ttttgt |
306 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||| |||||| ||||||||||||||| |||||| |
|
|
| T |
14275930 |
ttgggacccgtggggtatgtggtgtccctaattggttggagccacagtggagtgttcataattggttgaaacccacacatatctacgaagaactttttgt |
14275831 |
T |
|
| Q |
307 |
tgccctataagggaggtgatgtcca |
331 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
14275830 |
tgccctataagggaggtgatatcca |
14275806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 153 - 326
Target Start/End: Complemental strand, 37803625 - 37803452
Alignment:
| Q |
153 |
ttgagtgctcataattggttgaggctcgttgtcttcttttggtgcccataattggttgggacccgtggggtatgtggtgtccataattggttggagtcac |
252 |
Q |
| |
|
|||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37803625 |
ttgagtgcccataattggttggggcatattgtcttcttttggtgcccataattggttggaacccgtggggtatgtggtgtccataattggttggagtcac |
37803526 |
T |
|
| Q |
253 |
ggtggagtgttcataattggttgaagcccacaaatatctacgaagaacttttgttgccctataagggaggtgat |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
37803525 |
ggtggagtgttcataattggttgaagcccacaaatatctatgaagaacttttgttgccctctaagggaggtgat |
37803452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 42 - 173
Target Start/End: Complemental strand, 37803698 - 37803568
Alignment:
| Q |
42 |
gagttaataagcaggtgtcgcatgcatacattcattgtcgcgtggtgccgataattggttcggacccgaagtcttgagtgcccataattggttggggctt |
141 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37803698 |
gagttaatatgcaggtgtcgcatgcatacattcattgtcgtgtggtgcccataattggttgggacccgaagtcttgagtgcccataattggttggggcat |
37803599 |
T |
|
| Q |
142 |
attgtttccttttgagtgctcataattggttg |
173 |
Q |
| |
|
||||| | |||||| |||| |||||||||||| |
|
|
| T |
37803598 |
attgtcttcttttg-gtgcccataattggttg |
37803568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 37806344 - 37806299
Alignment:
| Q |
1 |
ttaatttagtcggatactcattgtgagtggtctattttgtggagtt |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37806344 |
ttaatttagtcggatactcattgtgagtggtctattttgtggagtt |
37806299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 8377839 - 8378164
Alignment:
| Q |
1 |
ttaatttagtcggatactcattgtgagtggtctattttgtggagttaataagcaggtgtcgcatgcatacattcattgtcgcgtggtgccgataattggt |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
8377839 |
ttaatttagtcggatattcattgtgagttgtctattttgtggagttaatatgcaggtgtcgcatgcatacattcattgttgcgtggtgcccataattggt |
8377938 |
T |
|
| Q |
101 |
tcggacccgaagtcttgagtgcccataattggttggggcttattgtttccttttgagtgctcataattggttgaggctcgttgtcttcttttggtgccca |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
8377939 |
tgggacccgaagtcttgagtgcccataattggttggggcttattgtttccttgtgagtgctcataattggttgaggcccgttgatttcttttggtgccca |
8378038 |
T |
|
| Q |
201 |
taattggttgggacccgtggggtatgtggtgtccataattggttggagtcacggtggagtgttcataattggttgaagcccacaaatatctacgaagaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8378039 |
taattggttgggacccgtggggtatgtggtgtccataattggttggagtcacggcggagtgttcataattggttggagcccacaaatatctacgaagaac |
8378138 |
T |
|
| Q |
301 |
ttttgttgccctataagggaggtgat |
326 |
Q |
| |
|
|||||||| ||| ||||||||||||| |
|
|
| T |
8378139 |
ttttgttgtcctttaagggaggtgat |
8378164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 58796 - 58470
Alignment:
| Q |
1 |
ttaatttagtcggatactcattgtgagtggtctattttgtggagttaataagcaggtgtcgcatgcatacattcattgtcgcgtggtgccgataattggt |
100 |
Q |
| |
|
||||||||||||| |||||||| |||| ||| | ||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
58796 |
ttaatttagtcggttactcattatgagaggtgttttttgtggaattaataaccagctgtcgcatgcatacattcattgtcgcgtggtgcccataattggt |
58697 |
T |
|
| Q |
101 |
tcggacccgaagtcttgagtgcccataattggttggggcttattgtttcctttt-gagtgctcataattggttgaggctcgttgtcttcttttggtgccc |
199 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
58696 |
tgggacccgaagtcttgagtgcccataattggttggggcttattgtttcctttttgagtgctcataattggttgaggctcgttgtcttcttttggtgccc |
58597 |
T |
|
| Q |
200 |
ataattggttgggacccgtggggtatgtggtgtccataattggttggagtcacggtggagtgttcataattggttgaagcccacaaatatctacgaagaa |
299 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
58596 |
ataattggttgggacacgtggggtatgtggtgtccataattggttggagctacggtggagtgttcataattggttgaagctcacaaatatctacgaagaa |
58497 |
T |
|
| Q |
300 |
cttttgttgccctataagggaggtgat |
326 |
Q |
| |
|
|||||||||||||| |||||||||||| |
|
|
| T |
58496 |
cttttgttgccctacaagggaggtgat |
58470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 11991957 - 11991630
Alignment:
| Q |
1 |
ttaatttagtcggatactcattgtgagtggtctattttgtggagttaataagcaggtgtcgcatgcatacattcattgtcgcgtggtgccgataattggt |
100 |
Q |
| |
|
||||||| |||| |||||||||||||||| ||||||||||||||||||||| || |||||||| |||| ||||||||||||| ||||||| ||||||||| |
|
|
| T |
11991957 |
ttaatttggtcgaatactcattgtgagtgatctattttgtggagttaataaccatgtgtcgcaagcatgcattcattgtcgcatggtgcccataattggt |
11991858 |
T |
|
| Q |
101 |
tcggacccgaagtcttgagtgcccataattggttggggcttattgtttcctt-ttgagtgctcataattggttgaggctcgttgtcttcttttggtgccc |
199 |
Q |
| |
|
| |||||| |||||||||||||||||||||||||| ||||||| ||||| | ||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
11991857 |
tgggacccaaagtcttgagtgcccataattggttgaggcttatcgtttcttggttgagtgctcataattggttgaggctcgttgatttcatttggtgccc |
11991758 |
T |
|
| Q |
200 |
ataattggttgggacccgtggggtatgtggtgtccataattggttggagtcacggtggagtgttcataattggttgaagcccacaaatatctacgaagaa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11991757 |
ataattggttgggacccgtggggtatgtggtgtccataattggttggagccacggtggagtgttcataattggttgaaccccacaaatatctacgaagaa |
11991658 |
T |
|
| Q |
300 |
c-ttttgttgccctataagggaggtgat |
326 |
Q |
| |
|
| |||| |||||||||||||||| |||| |
|
|
| T |
11991657 |
ctttttattgccctataagggagatgat |
11991630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 151 - 322
Target Start/End: Original strand, 16837 - 17008
Alignment:
| Q |
151 |
ttttgagtgctcataattggttgaggctcgttgtcttcttttggtgcccataattggttgggacccgtggggtatgtggtgtccataattggttggagtc |
250 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16837 |
ttttgagtgctcataattggttgaggttcgttgatttcttttggtgcccataattggttgggacccgtggggtatgtggtgtccataattggttggagct |
16936 |
T |
|
| Q |
251 |
acggtggagtgttcataattggttgaagcccacaaatatctacgaagaacttttgttgccctataagggagg |
322 |
Q |
| |
|
||||||||||||| |||||||| |||||| |||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
16937 |
acggtggagtgttgataattggctgaagctcacaaatatctatgaagaacttttgttgtcctataagggagg |
17008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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