View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8776_high_5 (Length: 240)
Name: NF8776_high_5
Description: NF8776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8776_high_5 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 17773331 - 17773254
Alignment:
| Q |
163 |
taaaacacatacctatggatcttgacactgccaaaacaccaagaactcggtatccattccattgtatgatccttcctc |
240 |
Q |
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| T |
17773331 |
taaaacacatacctatggatcttgacactgccaaaacaccaagaactcggtatccattccattgtatgatctttcctc |
17773254 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 52218567 - 52218638
Alignment:
| Q |
169 |
acatacctatggatcttgacactgccaaaacaccaagaactcggtatccattccattgtatgatccttcctc |
240 |
Q |
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| T |
52218567 |
acatacctatggaccttgacatggccaagacaccaagaactctgtatcctttccaatgtatgactcttcctc |
52218638 |
T |
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