View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8776_low_1 (Length: 403)
Name: NF8776_low_1
Description: NF8776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8776_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 12445341 - 12444948
Alignment:
| Q |
1 |
tcataatgatagacatgttcaaagtaagattgtctcgaggaatatgcagaaaattacacatcacaaagttccaaaaggatgggaagcacgtcaagtcaaa |
100 |
Q |
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| T |
12445341 |
tcataatgatagacatgttcaaagtaagattgtctcgaggaatatgcagaaaattacacatcacaaagttccaaaaggatgggaagcacgtcaagtcaaa |
12445242 |
T |
|
| Q |
101 |
gcatcagacaacccagatatatccaggtttgttgcaatcaaagaatgttgcatttattgcattcagcaaagggccattagaaaaatattagaattctccc |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
12445241 |
gcatcagacaacccagatatatccgggtttgttgcagtcaaagaatgttgcatttattgcattcagcaaagggccattagaaaaatattagaattgtcac |
12445142 |
T |
|
| Q |
201 |
atttcaacctcaacaaatcagattcaaaacacaaagttggaatttgagtcatccaatcttcaatttaatggctcttatttactataggcaatgaatacat |
300 |
Q |
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||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
12445141 |
atttcgacctcaacagatcagattcaaaacac--agttggaatttgagtcatccaatctttaatttaatggctcttatttactataggcaatgaatacat |
12445044 |
T |
|
| Q |
301 |
taaatctgggtgggtcagtaaatcgatactggatatataattacaagttagatcatcgtacctcaaggatgttacgagcaaggtcatgatgtccat |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12445043 |
taaatctgggtgggtcagtaaatcgatactggatatataattacaagttagatcatcgtacctcaaggatgttacgagcaaggtcatgatgtccat |
12444948 |
T |
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