View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8776_low_2 (Length: 392)
Name: NF8776_low_2
Description: NF8776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8776_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 75 - 383
Target Start/End: Complemental strand, 31603961 - 31603649
Alignment:
| Q |
75 |
aagcacgactatgtactctgtgccagatttttccaagcataaccagaaacttaagcatgacctatgcatgggtgaagcacaatcatgcacccaatgcaga |
174 |
Q |
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| T |
31603961 |
aagcacgactatgtactctgtgccagatttttccaagcataaccagaaacttaagcatgacccgtgcatggatgaagcacaatcatgcacccaatgcaga |
31603862 |
T |
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| Q |
175 |
acaaaaacggttgttacaaacctttagaattctatggtttatagcttgtaactcgaaatgtcttgtctatgatgttaggctataaataaacctcgtttat |
274 |
Q |
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| T |
31603861 |
acaaaaacggttgttacaaacctttagaattctatggtttatagcttgtaactcgaaatgtcttgtgtatgatgttaggctataaataaacctcatttat |
31603762 |
T |
|
| Q |
275 |
gaggcaaaagacatgagcttatacttgtaaatttac----aagttgaaatcaaatccatgcattattcttaagcatttgttctttattcgcatttcttta |
370 |
Q |
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| T |
31603761 |
gaggcaaaagacatgagattatacttgtaaatttactcttaagttgaaatcaaatccatgcattattcttaagcatttgttcttcattcgcatttcttta |
31603662 |
T |
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| Q |
371 |
ttttcttctcact |
383 |
Q |
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||||||| ||||| |
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| T |
31603661 |
ttttcttgtcact |
31603649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 53000735 - 53000674
Alignment:
| Q |
172 |
agaacaaaaacggttgttacaaacctttagaattctatggtttatagcttgtaactcgaaat |
233 |
Q |
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| T |
53000735 |
agaacaaaaatggttgttacaaacctttggaattctatagtttatggcttgtaactcgaaat |
53000674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 377
Target Start/End: Complemental strand, 53000589 - 53000523
Alignment:
| Q |
311 |
aagttgaaatcaaatccatgcattattcttaagcatttgttctttattcgcatttctttattttctt |
377 |
Q |
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| T |
53000589 |
aagttaaaatcaaattcctacattattcttaagtttttgttctttatttgcatttatttattttctt |
53000523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 304
Target Start/End: Original strand, 12521005 - 12521144
Alignment:
| Q |
169 |
tgcagaacaaaaacggttgttacaaacctttagaattctatggtttatagcttgtaactcgaaat----gtcttgtctatgatgttaggctataaataaa |
264 |
Q |
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| T |
12521005 |
tgcagaaccaaaatggttgttacaaacttttgaaattctctcatttatgacttgtaactcgaaattaatgcattgtctatgattctaggctacaaatata |
12521104 |
T |
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| Q |
265 |
cctcgtttatgaggcaaaagacatgagcttatacttgtaa |
304 |
Q |
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| T |
12521105 |
cccaatttatgtggcaaaagacatgacttcatacttgtaa |
12521144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 285
Target Start/End: Complemental strand, 29968573 - 29968499
Alignment:
| Q |
215 |
atagcttgtaactcgaa----atgtcttgtctatgatgttaggctataaataaacctcgtttatgaggcaaaaga |
285 |
Q |
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||||||||||||||||| ||||||||| |||||| |||| |||||||| || || |||||||||||||||| |
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| T |
29968573 |
atagcttgtaactcgaatttaatgtcttgtttatgattctaggttataaatagacatcatttatgaggcaaaaga |
29968499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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