View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8776_low_6 (Length: 229)
Name: NF8776_low_6
Description: NF8776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8776_low_6 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 17772985 - 17773203
Alignment:
| Q |
11 |
gaaactcttgctcccgagactgttggatcaactgcactggttgcaattttgactcaaaaccacataatagttgcgaattgcggtgattcaagagcagtct |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||| |
|
|
| T |
17772985 |
gaaactcttgctcccgagactgttggatccactgcactggttgcaattttgactcaaaaccacataatagttgcgaattgtggggattcaagagcggtct |
17773084 |
T |
|
| Q |
111 |
tgtgtcgaggaaaagaagcacttccgttgtctatcgaccaaaaagtaaggcatttgtttcacaatttgtttgctggactcttagaagctgaagtgatctg |
210 |
Q |
| |
|
|||||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17773085 |
tgtgtcgaggaaaagaagcactgccattgtcgattgaccaaaaagtaaggcatttgtttcacaatttgtttgctggactcttagaagctgaagtgatctg |
17773184 |
T |
|
| Q |
211 |
atgcaggaaactttatttc |
229 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
17773185 |
atgcaggaaactttatttc |
17773203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 52218914 - 52218760
Alignment:
| Q |
11 |
gaaactcttgctcccgagactgttggatcaactgcactggttgcaattttgactcaaaaccacataatagttgcgaattgcggtgattcaagagcagtct |
110 |
Q |
| |
|
|||||||||||||| ||||||| ||| || |||||| ||||||| ||||| | ||||| ||||||||| ||||| ||||| || ||||| ||||| |||| |
|
|
| T |
52218914 |
gaaactcttgctcctgagactgctggctccactgcagtggttgccattttaaatcaaacccacataattgttgcaaattgtggggattcgagagctgtct |
52218815 |
T |
|
| Q |
111 |
tgtgtcgaggaaaagaagcacttccgttgtctatcgaccaaaaagtaaggcattt |
165 |
Q |
| |
|
||| ||| || |||||||| || |||||||| ||||| |||||||||||||| |
|
|
| T |
52218814 |
tgtatcgtgggaaagaagccattgcgttgtcttctgaccacaaagtaaggcattt |
52218760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University