View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8777_high_2 (Length: 618)
Name: NF8777_high_2
Description: NF8777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8777_high_2 |
 | |
|
| [»] chr5 (6 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr4 (6 HSPs) |
| |
|
| [»] scaffold1437 (2 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 545; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 10 - 618
Target Start/End: Complemental strand, 33139589 - 33138981
Alignment:
| Q |
10 |
acatcatagcaaaacattgaacatgaattccgaatgttacattagattctcaagtcttaactatccttgttcatataaaacgtcgaacatgataacatca |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
33139589 |
acatcatagcaaaacattgaacatgaattcctaatgttacattagattctcaagtcttaactatccttgttcatataaaacatcgaacatgataacataa |
33139490 |
T |
|
| Q |
110 |
aagagaagagaagaagaacaataaaaagaaacataacagctttatatgcctcaaagtggttcaattgttcaaactagagagagttctatgaacttcattc |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
33139489 |
aagagaagagaagaagaacaataaaaagaaatatagcagctttatatgcctcaaagtggttcaattgttcaaacttgagagtgttctatgaacttcattc |
33139390 |
T |
|
| Q |
210 |
aaaaagtacctagtattaactcttgaattggtagaagaggaacatgccgaagatgaagctgaaattacagatgaacttttaggtagtgaaattagactat |
309 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33139389 |
aaaaagtacctagtattaactcttgcattggtagaagaggcacatgctgaagatgaagctgaaattacagatgaacttttaggtagtgaaattagattat |
33139290 |
T |
|
| Q |
310 |
catgtgagctaatttccctatcctcttcagtaattgtttccatcatatttgatgctctatgcctcataacagagacatattgtggtggtgccacctccat |
409 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
33139289 |
catgtgagctaatttctctatcctcttcggtaattgtttccatcatatttgatgctctttgcctcataacagaaacatattgtggtggtgccacctccat |
33139190 |
T |
|
| Q |
410 |
gaaaaatcttgcaatgcgagaacttgccattcttaatgtgaattaacttcaagtgttcaattggacaaaaggtgtaattgctaagagatagataggaatg |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33139189 |
aaaaaatcttgcaatgcgagaacttgccattcttaatgtgaattaacttcaagtgttcaattggacaaaaggtgtaattgctaagagatagataggaatg |
33139090 |
T |
|
| Q |
510 |
aaaatgttttgtattgaggatgtgtttgaagcataagaacatggttcaatttataaagggtggctagaagtaattaactaggcttaaattgagtcaaggg |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33139089 |
aaaatgttttgtattgaggatgtgtttgaagcataagaacatggttcaatttataaagggtggctagaagtaattaactaggcttaaattgagtcaaggg |
33138990 |
T |
|
| Q |
610 |
tcttaatct |
618 |
Q |
| |
|
||||||||| |
|
|
| T |
33138989 |
tcttaatct |
33138981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 286 - 618
Target Start/End: Complemental strand, 33149323 - 33148981
Alignment:
| Q |
286 |
ttttaggtagtgaaattagactatcatgtgagctaatttccctatcctcttcagtaattgtttccatcatatttgatgctctatgcctcataacagagac |
385 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||| ||||| || |
|
|
| T |
33149323 |
ttttaggtagtgaaattacactatcatgtgagttaatttccctatcctcttcagcaattgtttccatcatctttgatgttctatgcctcatcacagaaac |
33149224 |
T |
|
| Q |
386 |
atattgtggtggtgccacctccatgaaaaatcttgcaatgcgagaacttgccattcttaatgtgaattaacttcaagtgttcaattg-gacaaaaggtgt |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||||| || |||| |||| |
|
|
| T |
33149223 |
atattgtggtggtgccacctccatgaaaaaccttgcaacgcgagaacttgccattcttaatgtgaactagtttcaagtgttcaattgcgaaaaaatgtgt |
33149124 |
T |
|
| Q |
485 |
aattgctaagagatagataggaatgaaaat------------gttttgtattgaggatgtgtttgaagcataagaacatggttcaatttataaagggtgg |
572 |
Q |
| |
|
||| ||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
33149123 |
aatcactaagagatagattggaatgaaaattgagctgaaaacgttttgtatt-ttgatgtgtttgaagcataaga--atagttcaatttataaagggtgg |
33149027 |
T |
|
| Q |
573 |
ctagaagtaattaactaggcttaaattgagtcaagggtcttaatct |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33149026 |
ctagaagtaattaactaggcttaaattgagtcaagggtcttaatct |
33148981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 178 - 308
Target Start/End: Complemental strand, 33143104 - 33142971
Alignment:
| Q |
178 |
tcaaactagagagagttctatgaacttcattcaaaaagtacctagtattaactcttgaattggtagaagagga---acatgccgaagatgaagctgaaat |
274 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||| |||||||||||| |||| | ||| |||||||||||| || |||||| |||||| |||||||||| |
|
|
| T |
33143104 |
tcaaacttgagagtgttctatgaacttcattcagaaagtacctagtgttaattgttgcattggtagaagaagatgcacatgcagaagataaagctgaaat |
33143005 |
T |
|
| Q |
275 |
tacagatgaacttttaggtagtgaaattagacta |
308 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||| |
|
|
| T |
33143004 |
tgcagatgaacttttaggttttgaaattagacta |
33142971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 343 - 500
Target Start/End: Complemental strand, 33142969 - 33142808
Alignment:
| Q |
343 |
ttgtttccatcatatttgatgctctatgcctcataacagagacatattgtggtggtgccacctccatgaaaaatcttgcaatgcgagaacttgcc---at |
439 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||| ||||| |||||||||||||||||||| | ||||||||| ||| ||| |||||| ||| | | |
|
|
| T |
33142969 |
ttgtttcaatcatatttgatgttctatgcctcatcacagaaacatattgtggtggtgccactttcatgaaaaaccttataatccgagaatttgtcttttt |
33142870 |
T |
|
| Q |
440 |
tcttaatgtgaattaacttcaagtgttcaattg-gacaaaaggtgtaattgctaagagatag |
500 |
Q |
| |
|
||| |||||||||||| |||||||||| ||||| | |||| |||||||||| ||| ||||| |
|
|
| T |
33142869 |
tctaaatgtgaattaatttcaagtgtttaattgtggaaaaatgtgtaattgccaagtgatag |
33142808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 536 - 599
Target Start/End: Complemental strand, 33142790 - 33142727
Alignment:
| Q |
536 |
tgaagcataagaacatggttcaatttataaagggtggctagaagtaattaactaggcttaaatt |
599 |
Q |
| |
|
||||||| || ||||||||||||||||||| ||||||| |||| |||||||||||||||||||| |
|
|
| T |
33142790 |
tgaagcacaaaaacatggttcaatttataaggggtggccagaaataattaactaggcttaaatt |
33142727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 33143212 - 33143137
Alignment:
| Q |
34 |
gaattccgaatgttacattagattctcaagtcttaactatccttgttcatataaaacgtcgaacatgataacatca |
109 |
Q |
| |
|
||||||| |||||||||||| |||||||||| |||||||||||| |||||||||||| | ||||| ||||| |||| |
|
|
| T |
33143212 |
gaattcctaatgttacattacattctcaagtattaactatcctttttcatataaaactttgaacaggataatatca |
33143137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 198; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 286 - 618
Target Start/End: Complemental strand, 34011981 - 34011639
Alignment:
| Q |
286 |
ttttaggtagtgaaattagactatcatgtgagctaatttccctatcctcttcagtaattgtttccatcatatttgatgctctatgcctcataacagagac |
385 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||| ||||| || |
|
|
| T |
34011981 |
ttttaggtagtgaaattacactatcatgtgagttaatttccctatcctcttcagcaattgtttccatcatctttgatgttctatgcctcatcacagaaac |
34011882 |
T |
|
| Q |
386 |
atattgtggtggtgccacctccatgaaaaatcttgcaatgcgagaacttgccattcttaatgtgaattaacttcaagtgttcaattg-gacaaaaggtgt |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||||| || |||| |||| |
|
|
| T |
34011881 |
atattgtggtggtgccacctccatgaaaaaccttgcaacgcgagaacttgccattcttaatgtgaactagtttcaagtgttcaattgcgaaaaaatgtgt |
34011782 |
T |
|
| Q |
485 |
aattgctaagagatagataggaatgaaaat------------gttttgtattgaggatgtgtttgaagcataagaacatggttcaatttataaagggtgg |
572 |
Q |
| |
|
||| ||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
34011781 |
aatcactaagagatagattggaatgaaaattgagctgaaaacgttttgtatt-ttgatgtgtttgaagcataaga--atagttcaatttataaagggtgg |
34011685 |
T |
|
| Q |
573 |
ctagaagtaattaactaggcttaaattgagtcaagggtcttaatct |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34011684 |
ctagaagtaattaactaggcttaaattgagtcaagggtcttaatct |
34011639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 286 - 618
Target Start/End: Original strand, 3215308 - 3215650
Alignment:
| Q |
286 |
ttttaggtagtgaaattagactatcatgtgagctaatttccctatcctcttcagtaattgtttccatcatatttgatgctctatgcctcataacagagac |
385 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||| |||||| |||||||||||||| ||||||||||||||| ||||||| |||||||||||| ||||| || |
|
|
| T |
3215308 |
ttttaggtagtgaaattacactgtcatgtgagttaattttcctatcctcttcagcaattgtttccatcatctttgatgttctatgcctcatcacagaaac |
3215407 |
T |
|
| Q |
386 |
atattgtggtggtgccacctccatgaaaaatcttgcaatgcgagaacttgccattcttaatgtgaattaacttcaagtgttcaattg-gacaaaaggtgt |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||| | |||| |||| |
|
|
| T |
3215408 |
atattgtggtggtgccacctccatgaaaaaccttgcaacgcgagaacttgccattcttaatgtgaactaatttcaagtgttcaattgcggaaaaatgtgt |
3215507 |
T |
|
| Q |
485 |
aattgctaagagatagataggaatgaaaat------------gttttgtattgaggatgtgtttgaagcataagaacatggttcaatttataaagggtgg |
572 |
Q |
| |
|
||| ||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
3215508 |
aatcactaagagatagattggaatgaaaattgagctgaaatcgttttgtatt-ttgatgtgtttgaagcataaga--atagttcaatttataaagggtgg |
3215604 |
T |
|
| Q |
573 |
ctagaagtaattaactaggcttaaattgagtcaagggtcttaatct |
618 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3215605 |
ctagaagtaattatctaggcttaaattgagtcaagggtcttaatct |
3215650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 177 - 431
Target Start/End: Original strand, 32349906 - 32350160
Alignment:
| Q |
177 |
ttcaaactagagagagttctatgaacttcattcaaaaagtacctagtattaactcttgaattggtagaagaggaacatgccgaagatgaa---gctgaaa |
273 |
Q |
| |
|
|||||||| ||||| |||||||||||||| |||| |||||||||| |||||| || |||||||||||||| |||||| |||| | | | |||| |
|
|
| T |
32349906 |
ttcaaacttgagagtgttctatgaacttccttcaggaagtacctagaattaacaactgcattggtagaagaggcacatgcagaagcagcaagagatgaag |
32350005 |
T |
|
| Q |
274 |
ttacagatgaacttttaggtagtgaaattagactatcatgtgagctaatttccctatcctcttcagtaattgtttccatcatatttgatgctctatgcct |
373 |
Q |
| |
|
|| |||||| |||||||| ||||||||| |||||||| |||||| |||||| |||||||||||||||||||||||||||| |||||| |||| |||| |
|
|
| T |
32350006 |
tt---gatgaatttttaggtggtgaaattacactatcatttgagctcatttccatatcctcttcagtaattgtttccatcatcattgatgttctacgcct |
32350102 |
T |
|
| Q |
374 |
cataacagagacatattgtggtggtgccacctccatgaaaaatcttgcaatgcgagaa |
431 |
Q |
| |
|
||| || ||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32350103 |
catcacgctaacatactgtggtggtgccacctccatgaaaaaccttgcaatgcgagaa |
32350160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 280 - 446
Target Start/End: Original strand, 32342874 - 32343040
Alignment:
| Q |
280 |
atgaacttttaggtagtgaaattagactatcatgtgagctaatttccctatcctcttcagtaattgtttccatcatatttgatgctctatgcctcataac |
379 |
Q |
| |
|
|||||||||| ||| ||||||| | ||| |||| |||| | ||||||||||| ||||| || |||||||||||||| ||||||| |||||||||||| || |
|
|
| T |
32342874 |
atgaactttttggtggtgaaatcacactgtcatttgagttgatttccctatcatcttcggtgattgtttccatcatctttgatgttctatgcctcatcac |
32342973 |
T |
|
| Q |
380 |
agagacatattgtggtggtgccacctccatgaaaaatcttgcaatgcgagaacttgccattcttaat |
446 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| ||||||||||||||| |||||||| ||||| |
|
|
| T |
32342974 |
gctaacatactgtggtggtgctacctccatgaaaaaccttgcaatgcgagaatttgccattgttaat |
32343040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 513 - 618
Target Start/End: Original strand, 32343110 - 32343214
Alignment:
| Q |
513 |
atgttttgtattgaggatgtgtttgaagcataagaacatggttcaatttataaagggtggctagaagtaattaactaggcttaaattgagtcaagggtct |
612 |
Q |
| |
|
|||||||||||||||||||||| | ||||| ||| ||||||||||||||||| ||||||||||| | | ||||||||||||||||||||||||||||| |
|
|
| T |
32343110 |
atgttttgtattgaggatgtgtatcaagcacaagggcatggttcaatttataaggggtggctagagatga-taactaggcttaaattgagtcaagggtct |
32343208 |
T |
|
| Q |
613 |
taatct |
618 |
Q |
| |
|
| |||| |
|
|
| T |
32343209 |
ttatct |
32343214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 511 - 565
Target Start/End: Original strand, 32350207 - 32350261
Alignment:
| Q |
511 |
aaatgttttgtattgaggatgtgtttgaagcataagaacatggttcaatttataa |
565 |
Q |
| |
|
|||||||||||||| ||| ||||| |||||||| || ||| |||||||||||||| |
|
|
| T |
32350207 |
aaatgttttgtattaagggtgtgtatgaagcattaggacacggttcaatttataa |
32350261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 32342783 - 32342855
Alignment:
| Q |
177 |
ttcaaactagagagagttctatgaacttcattcaaaaagtacctagtattaactcttgaattggtagaagagg |
249 |
Q |
| |
|
|||||||| ||||| |||||||||||||| |||| |||| ||| || ||||| ||| |||||||||||||| |
|
|
| T |
32342783 |
ttcaaacttgagagtgttctatgaacttccttcaggaagtccctggtgttaacagttgcattggtagaagagg |
32342855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1437 (Bit Score: 142; Significance: 3e-74; HSPs: 2)
Name: scaffold1437
Description:
Target: scaffold1437; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 286 - 514
Target Start/End: Complemental strand, 761 - 532
Alignment:
| Q |
286 |
ttttaggtagtgaaattagactatcatgtgagctaatttccctatcctcttcagtaattgtttccatcatatttgatgctctatgcctcataacagagac |
385 |
Q |
| |
|
|||||||||||||||||| | | ||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||| ||||| || |
|
|
| T |
761 |
ttttaggtagtgaaattacattgtcatgtgagttaatttccctatcctcttcagcaattgtttccatcatctttgatgttctatgcctcatcacagaaac |
662 |
T |
|
| Q |
386 |
atattgtggtggtgccacctccatgaaaaatcttgcaatgcgagaacttgccattcttaatgtgaattaacttcaagtgttcaattg-gacaaaaggtgt |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||| ||| |||||||||||||||| | |||| |||| |
|
|
| T |
661 |
atattgtggtggtgccacctccatgaaaaaccttgcaacgcgagaacttgtcattcttaatgtgaactaatttcaagtgttcaattgcggaaaaatgtgt |
562 |
T |
|
| Q |
485 |
aattgctaagagatagataggaatgaaaat |
514 |
Q |
| |
|
||| ||||||||||||| ||||||||||| |
|
|
| T |
561 |
aatcactaagagatagattggaatgaaaat |
532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1437; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 909 - 867
Alignment:
| Q |
61 |
aagtcttaactatccttgttcatataaaacgtcgaacatgata |
103 |
Q |
| |
|
||||||||| |||||||||||||||||||| | |||||||||| |
|
|
| T |
909 |
aagtcttaattatccttgttcatataaaacattgaacatgata |
867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University