View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8777_high_8 (Length: 230)
Name: NF8777_high_8
Description: NF8777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8777_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 42072169 - 42072341
Alignment:
| Q |
1 |
tgacgttttcttttccattcctcatttcatgtcttgtttctcaaacatcacaatctaaccatacacacaaaatcaaatccaaccgttgaataccacttgt |
100 |
Q |
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| T |
42072169 |
tgacgttttcttttccattcctcatttcatgtcttgtttctcaaacatcacaatctaaccatacacacaaaatcaaatctaaccgttgaataccacttgt |
42072268 |
T |
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| Q |
101 |
tcttccatcttgttcttcttctcttatttcaatcctcaacaaaaacattccactgcgcatatattattatctt |
173 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42072269 |
tcttccatcttgttcttcttctcttatttcaatcctcaacaaaaacattccactgcacatatattattatctt |
42072341 |
T |
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