View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8777_low_1 (Length: 817)
Name: NF8777_low_1
Description: NF8777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8777_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 370 - 801
Target Start/End: Complemental strand, 13879344 - 13878913
Alignment:
| Q |
370 |
ctcatctagatatgttttaggtttcacttaaaagagggagggatgaacagagaagtagttttttagttactattttaaatgatgaattagtttgcatgta |
469 |
Q |
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| T |
13879344 |
ctcatctagctatgttttaggtttcacttaaaagagggagggatgaacagagaagtagtattttagttactattttaaatgatgaattagtttgcatgta |
13879245 |
T |
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| Q |
470 |
tttgagatctaaaaagctatttagttagttaattagtgttctgttctgtttgtaccaatttctggatttgacattaattaccaattgctatcaatcaata |
569 |
Q |
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| T |
13879244 |
tttgagatctaaaaagctatttagttagttaattagtgttctgttctgtttgtaccaatttctggatttgacattaattaccaattgctatcaatcaata |
13879145 |
T |
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| Q |
570 |
ttataaatatatgattaacaatttcatttgctattataattatatagctagttgatgcaacttaatctgccttctattttgttgcgatccacctttcaaa |
669 |
Q |
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| T |
13879144 |
ttataaatatatgattaacaatttcatttgctattataattatatagctagttgatgcaacttaatctgccttctattttgttgcgatcgacctttcaaa |
13879045 |
T |
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| Q |
670 |
ttttgttatattgattgaagcgtacacacataactgcttgatgcattaaatttagagctgttagaaaagatcattgaaaatcaagtgatattctgctgtg |
769 |
Q |
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| T |
13879044 |
ttttgttatattgattgaagcgtacacacataactgcttgctgcattaaatttagagctgttagaaaagatcattgaaaatcaagtgatattctgctgtg |
13878945 |
T |
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| Q |
770 |
gcaattggttttctctccatgtacgttctttt |
801 |
Q |
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| T |
13878944 |
gcaattggttttctctccatgtacgttctttt |
13878913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 39 - 308
Target Start/End: Complemental strand, 13879675 - 13879406
Alignment:
| Q |
39 |
gatgatgatgatcttgttctctgggattttacggagactgaggagtctgtgattttgcggtcgaatcttgtcgctgacaacgtgaggaaggaagagattg |
138 |
Q |
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| T |
13879675 |
gatgatgatgatcttgttctctgggattttacggagactgaggagtctgtgattttgcggtcgaatcttgtcgctgacaacgtgaggaaggaagagattg |
13879576 |
T |
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| Q |
139 |
atgtctgtgttgatcacggtactctcaggattgaggatgttcttcccggtcgaaatctgttttcagtaacacttaacttgaaagggaagcactgcgactt |
238 |
Q |
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| T |
13879575 |
atgtctgtgttgatcacggtactctcaggattgaggatgttcttcccggtcgaaatctgttttcagtaacacttaacttgaaagggaagcactgcgactt |
13879476 |
T |
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| Q |
239 |
tgttaacactaaagccaaaatgatagagaacaatttcattgaagttgtggttcctaagctcaagaacaag |
308 |
Q |
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| T |
13879475 |
tgttaacactaaagccaaaatgatagagaacaatttcattgaagttgtggttcctaagctcaagaacaag |
13879406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 49 - 308
Target Start/End: Complemental strand, 13875448 - 13875189
Alignment:
| Q |
49 |
atcttgttctctgggattttacggagactgaggagtctgtgattttgcggtcgaatcttgtcgctgacaacgtgaggaaggaagagattgatgtctgtgt |
148 |
Q |
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| T |
13875448 |
atcttgttctctgtgattttgaggagaccgaggagtctttgatttttcggttgaatctggtcgccaacaacgtgaggaaggaagagattgatgtctgtgt |
13875349 |
T |
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| Q |
149 |
tgatcacggtactctcaggattgaggatgttcttcccggtcgaaatctgttttcagtaacacttaacttgaaagggaagcactgcgactttgttaacact |
248 |
Q |
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| T |
13875348 |
tgatcacggtactctcaggattaaggatgctcttccaggtcgaaatcgattttcaggtacactcgacttgaaagggaagcatttcgacgttgttaacact |
13875249 |
T |
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| Q |
249 |
aaagccaaaatgatagagaacaatttcattgaagttgtggttcctaagctcaagaacaag |
308 |
Q |
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| T |
13875248 |
aaagccaaaatgatagagaacaatttccttgaaattgtggttcccaagctcaacaacaag |
13875189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 678 - 740
Target Start/End: Complemental strand, 13874799 - 13874737
Alignment:
| Q |
678 |
tattgattgaagcgtacacacataactgcttgatgcattaaatttagagctgttagaaaagat |
740 |
Q |
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| T |
13874799 |
tattgattgaagcgtacacacataattgcttgctgcattatacttagagctgttagaaaagat |
13874737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 548 - 586
Target Start/End: Complemental strand, 13885034 - 13884996
Alignment:
| Q |
548 |
taccaattgctatcaatcaatattataaatatatgatta |
586 |
Q |
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| T |
13885034 |
taccaattggtatcaatcaatattataaatatatgatta |
13884996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 425 - 506
Target Start/End: Complemental strand, 13885159 - 13885075
Alignment:
| Q |
425 |
tagttttttagttactattttaaatgatgaattagtttgc---atgtatttgagatctaaaaagctatttagttagttaattagt |
506 |
Q |
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| T |
13885159 |
tagtattttagttgctattttaaatgcttaattagtatgatgaatgtattagagatctaaaaagggatttagttggttaattagt |
13885075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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