View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8777_low_8 (Length: 237)
Name: NF8777_low_8
Description: NF8777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8777_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 33138695 - 33138884
Alignment:
| Q |
16 |
ataatctcatcatgtttgaaatgaggagagatttcatgcattgtgaggatgaaataaacacaagtggaagagtattaaacggcttactacactaaaattt |
115 |
Q |
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| T |
33138695 |
ataatctcatcatgtttgaaatgaggagagatttcatgcattgtgaggatgaaataaacacaagtggaagagtattaaatggct-actacactaaaattt |
33138793 |
T |
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| Q |
116 |
ctcaatgaaaagtataaatttggaactcaacgtatcaaacaaaaaccatatccaaaaggatattataatttccatccaggttttgacacat |
206 |
Q |
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| T |
33138794 |
atcaatgaaaagtataaatttggaactcaacgtaccaaacaaaaaccatatccaaaaggatattataatttccatccaggttttgacacat |
33138884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 204
Target Start/End: Original strand, 33148754 - 33148880
Alignment:
| Q |
79 |
gtggaagagtattaaacggct--tactacactaaaatttctcaatgaaaagtataaatttggaactcaacgtatcaaacaaaaaccatatccaaaaggat |
176 |
Q |
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| T |
33148754 |
gtggaagagtaataaactgctactactacactaaaatgtccaaatgaaaagtgtaaaat-ggaacttaatgtaccaaacaaaaactatatcttagaggat |
33148852 |
T |
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| Q |
177 |
attataatttccatccaggttttgacac |
204 |
Q |
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| T |
33148853 |
attagaatttccatccagatgttgacac |
33148880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 79 - 204
Target Start/End: Complemental strand, 3215874 - 3215751
Alignment:
| Q |
79 |
gtggaagagtattaaacggcttactacactaaaatttctcaatgaaaagtataaatttggaactcaacgtatcaaacaaaaaccatatccaaaaggatat |
178 |
Q |
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| T |
3215874 |
gtggaagagtattaaacggct-actacactaaaatgtcccaatgaaaagtgtaaaat-ggaacttaatgtaccaaacaaaaactatatcttagaggatat |
3215777 |
T |
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| Q |
179 |
tataatttccatccaggttttgacac |
204 |
Q |
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| T |
3215776 |
tagaattttcatccaggtgttgacac |
3215751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 222
Target Start/End: Complemental strand, 32350517 - 32350374
Alignment:
| Q |
79 |
gtggaagagtattaaacggcttactacactaaaatttctcaatgaaaagtataaatttggaactcaacgtatcaaacaaaaaccatatccaaaaggatat |
178 |
Q |
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| T |
32350517 |
gtggaagagtgttaaactgct-actacactgaaaggtctcaaagaaaagtgcaa-tttggaactcagtgtatccaacaaaaatcgtatcttaaaggatat |
32350420 |
T |
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| Q |
179 |
t--ataatttccatccaggttttgacacatatcaaacactgtccca |
222 |
Q |
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| T |
32350419 |
ataagaatttcaatccaagttttggcacttaccaaacactgtccca |
32350374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 32343900 - 32343836
Alignment:
| Q |
23 |
catcatgtttgaaatgaggagagatttcatgcattgtgaggat--gaaataaacacaagtggaag |
85 |
Q |
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| T |
32343900 |
catcatgtttgaaatgagaaaagattgtattcattgtgaggatgagaaataaacacaagtcgaag |
32343836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 32343377 - 32343326
Alignment:
| Q |
170 |
aaaggatattataatttccatccaggttttgacacatatcaaacactgtccca |
222 |
Q |
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| T |
32343377 |
aaaggatataataatt-caatccaggttttgacacatgccaaacactgtccca |
32343326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 204
Target Start/End: Original strand, 34011412 - 34011538
Alignment:
| Q |
79 |
gtggaagagtattaaacggct--tactacactaaaatttctcaatgaaaagtataaatttggaactcaacgtatcaaacaaaaaccatatccaaaaggat |
176 |
Q |
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||||||||||| ||||| ||| |||||||||||||| || |||||||||| |||| | |||||| || ||| ||||||||||| ||||| | ||||| |
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| T |
34011412 |
gtggaagagtaataaactgctactactacactaaaatgtccaaatgaaaagtgtaaaat-ggaacttaatgtaccaaacaaaaactatatcttagaggat |
34011510 |
T |
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| Q |
177 |
attataatttccatccaggttttgacac |
204 |
Q |
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|||| ||||||||||||| | ||||||| |
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| T |
34011511 |
attagaatttccatccagatgttgacac |
34011538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 34010942 - 34010979
Alignment:
| Q |
46 |
atttcatgcattgtgaggatgaaataaacacaagtgga |
83 |
Q |
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| T |
34010942 |
atttcatccattgtgaggatgaaattaacacaagtgga |
34010979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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