View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8778_1 (Length: 825)
Name: NF8778_1
Description: NF8778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8778_1 |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 30 - 461
Target Start/End: Original strand, 13878913 - 13879344
Alignment:
| Q |
30 |
aaaagaacgtacatggagagaaaaccaattgccacagcagaatatcacttgattttcaatgatcttttctaacagctctaaatttaatgcatcaagcagt |
129 |
Q |
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| T |
13878913 |
aaaagaacgtacatggagagaaaaccaattgccacagcagaatatcacttgattttcaatgatcttttctaacagctctaaatttaatgcagcaagcagt |
13879012 |
T |
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| Q |
130 |
tatgtgtgtacgcttcaatcaatataacaaaatttgaaaggtggatcgcaacaaaatagaaggcagattaagttgcatcaactagctatataattataat |
229 |
Q |
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| T |
13879013 |
tatgtgtgtacgcttcaatcaatataacaaaatttgaaaggtcgatcgcaacaaaatagaaggcagattaagttgcatcaactagctatataattataat |
13879112 |
T |
|
| Q |
230 |
agcaaatgaaattgttaatcatatatttataatattgattgatagcaattggtaattaatgtcaaatccagaaattggtacaaacagaacagaacactaa |
329 |
Q |
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| T |
13879113 |
agcaaatgaaattgttaatcatatatttataatattgattgatagcaattggtaattaatgtcaaatccagaaattggtacaaacagaacagaacactaa |
13879212 |
T |
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| Q |
330 |
ttaactaactaaatagctttttagatctcaaatacatgcaaactaattcatcatttaaaatagtaactaaaaaactacttctctgttcatccctccctct |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13879213 |
ttaactaactaaatagctttttagatctcaaatacatgcaaactaattcatcatttaaaatagtaactaaaatactacttctctgttcatccctccctct |
13879312 |
T |
|
| Q |
430 |
tttaagtgaaacctaaaacatatctagatgag |
461 |
Q |
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| T |
13879313 |
tttaagtgaaacctaaaacatagctagatgag |
13879344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 523 - 808
Target Start/End: Original strand, 13879406 - 13879691
Alignment:
| Q |
523 |
cttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggctttagtgttaacaaagtcgcagtgcttccctttcaagttaagt |
622 |
Q |
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| T |
13879406 |
cttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggctttagtgttaacaaagtcgcagtgcttccctttcaagttaagt |
13879505 |
T |
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| Q |
623 |
gttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacatcaatctcttccttcctcacgttgtcagcga |
722 |
Q |
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| T |
13879506 |
gttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacatcaatctcttccttcctcacgttgtcagcga |
13879605 |
T |
|
| Q |
723 |
caagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagatcatcatcatcgttgttgttgttgttg |
808 |
Q |
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| T |
13879606 |
caagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagatcatcatcatcatcgttgttgttgttg |
13879691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 523 - 795
Target Start/End: Original strand, 13875189 - 13875461
Alignment:
| Q |
523 |
cttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggctttagtgttaacaaagtcgcagtgcttccctttcaagttaagt |
622 |
Q |
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|||||| |||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||| ||| |
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| T |
13875189 |
cttgttgttgagcttgggaaccacaatttcaaggaaattgttctctatcattttggctttagtgttaacaacgtcgaaatgcttccctttcaagtcgagt |
13875288 |
T |
|
| Q |
623 |
gttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacatcaatctcttccttcctcacgttgtcagcga |
722 |
Q |
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| T |
13875289 |
gtacctgaaaatcgatttcgacctggaagagcatccttaatcctgagagtaccgtgatcaacacagacatcaatctcttccttcctcacgttgttggcga |
13875388 |
T |
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| Q |
723 |
caagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagatcatcatcatcgtt |
795 |
Q |
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| T |
13875389 |
ccagattcaaccgaaaaatcaaagactcctcggtctcctcaaaatcacagagaacaagataatagtcatcgtt |
13875461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 91 - 153
Target Start/End: Original strand, 13874737 - 13874799
Alignment:
| Q |
91 |
atcttttctaacagctctaaatttaatgcatcaagcagttatgtgtgtacgcttcaatcaata |
153 |
Q |
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| T |
13874737 |
atcttttctaacagctctaagtataatgcagcaagcaattatgtgtgtacgcttcaatcaata |
13874799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 13884996 - 13885034
Alignment:
| Q |
245 |
taatcatatatttataatattgattgatagcaattggta |
283 |
Q |
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| T |
13884996 |
taatcatatatttataatattgattgataccaattggta |
13885034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 325 - 406
Target Start/End: Original strand, 13885075 - 13885159
Alignment:
| Q |
325 |
actaattaactaactaaatagctttttagatctcaaatacat---gcaaactaattcatcatttaaaatagtaactaaaaaacta |
406 |
Q |
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| T |
13885075 |
actaattaaccaactaaatccctttttagatctctaatacattcatcatactaattaagcatttaaaatagcaactaaaatacta |
13885159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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