View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8778_2 (Length: 546)
Name: NF8778_2
Description: NF8778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8778_2 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 112 - 495
Target Start/End: Complemental strand, 6732963 - 6732562
Alignment:
| Q |
112 |
atcatcatgaatgagaattgctctttaggccctctcaatttttcacatgttcctaaaattttaaattgccccttttatatcgatcagaagttacgattta |
211 |
Q |
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| T |
6732963 |
atcatcatgaatgagaattgctctttaggccctctcaatttttcacaggttcctaaaattttaaattgccctttttatatcgatcaggagttacgattta |
6732864 |
T |
|
| Q |
212 |
atagcatcgaaagttatca------------------gaagttatatttcggtaggtcatagtataacaccagaacatgaaggaagtttctaatatgcan |
293 |
Q |
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| T |
6732863 |
atagcatcgaaagttatcatctgctcgttgtatatcagaagttacgtttcggtaggtcatagtatcacaccagaacatgaaggaagtttctaatatgcat |
6732764 |
T |
|
| Q |
294 |
nnnnnngtttgttttgaaacttcaaatacttgaactctaggcacaaaacactattcttcattcaaccattgatcttcttcatattgatgtcaaagacata |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
6732763 |
tattttgtttgttttgaaacttcaaatacttgaactctaggcacaaaacactattcttcattcaaccattgatcttcttcaaattgatgtcaaagatata |
6732664 |
T |
|
| Q |
394 |
ctattccttgtcaaattccttctaaaactcaacaagtatttgttcacttcttcgtattttgtttttgttgaagtttaggattttttagttcttgatgaaa |
493 |
Q |
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||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6732663 |
ctattccttctcacattccttctaaaactcaacaagtaattgttcacttcttcgtattttgtttttgttgaagtttaggattttttagttgttgatgaaa |
6732564 |
T |
|
| Q |
494 |
ta |
495 |
Q |
| |
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|| |
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| T |
6732563 |
ta |
6732562 |
T |
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