View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8778_3 (Length: 526)

Name: NF8778_3
Description: NF8778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8778_3
NF8778_3
[»] chr7 (22 HSPs)
chr7 (23-497)||(2136400-2136874)
chr7 (42-264)||(2139651-2139874)
chr7 (26-247)||(2099769-2099991)
chr7 (23-151)||(2127026-2127154)
chr7 (42-247)||(2066958-2067164)
chr7 (23-217)||(2074039-2074234)
chr7 (32-152)||(2115133-2115253)
chr7 (30-152)||(2244609-2244731)
chr7 (30-131)||(2690805-2690906)
chr7 (335-428)||(2139933-2140028)
chr7 (363-428)||(2690321-2690386)
chr7 (50-326)||(2058694-2058977)
chr7 (363-434)||(2074467-2074538)
chr7 (363-434)||(2100356-2100427)
chr7 (48-125)||(1695679-1695756)
chr7 (367-428)||(2115371-2115432)
chr7 (363-426)||(2059276-2059339)
chr7 (369-428)||(2127572-2127631)
chr7 (369-428)||(2067598-2067657)
chr7 (287-326)||(2067185-2067224)
chr7 (438-484)||(2140152-2140197)
chr7 (438-479)||(2244000-2244041)
[»] chr1 (1 HSPs)
chr1 (50-96)||(24031851-24031897)


Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 23 - 497
Target Start/End: Original strand, 2136400 - 2136874
Alignment:
Q  23 atcatcagaggctaagttattgatgacaaagccttccttaaattgcaacaaggcatggctttcatattgatgacattttggctgaatttgaggtaaacat 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2136400 atcatcagaggctaagttattgatgacaaagccttccttaaattgcaacaaggcatggctttcatattgatgacattttggctgaatttgaggtaaacat 2136499  T
Q  123 gtagtaaatgtgaaagagagaagtgaataaggnnnnnnnnnnttacaaacaaaacatgagaccacacaaacaccattgtatttgaatattttgaaattgg 222  Q
    ||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2136500 gtagtaaatgtgaaagagagaagtgaataaggaaaaaaaaaattacaaacaaaacatgagaccacacaaacaccattgtatttgaatattttgaaattgg 2136599  T
Q  223 ttttttggatgaaatactagacacaaacatgttttgaatactataggaatggactgcatataacaaatgaaaatgatttctagtgaacttgattatcatt 322  Q
    | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2136600 tcttttggatgaaatgctagacacaaacatgttttgaatactataggaatggactgcatataacaaatgaaaatgatttctagtgaacttgattatcatt 2136699  T
Q  323 gaccnnnnnnnnctttgttttctattttctagacatttggctattatttgactcagcaatttgctctgattttcttgctacttgcattcttggaaaacaa 422  Q
    ||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2136700 gaccaaaaaaaactttgttttctattttctagacatttggctattatttgactcagcaatttgctctgattttcttgctacttgcattcttggaaaacaa 2136799  T
Q  423 tttaattgacttcagtctagaactgactgtccatgtaagagcttgcacaaatttattgaaaatttatatcaaagc 497  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2136800 tttaattgacttcaatctagaactgactgtccatgtaagagcttgcacaaatttattgaaaatttatatcaaagc 2136874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 42 - 264
Target Start/End: Original strand, 2139651 - 2139874
Alignment:
Q  42 ttgatgacaaagccttccttaaattgcaacaaggcatggctttcatattgatgacattttggctgaatttgaggtaaacatgtagtaaatgtgaaagaga 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  2139651 ttgatgacaaagccttccttaaattgcaacaaggcatggctttcatattgatgacactttggctgaatttgaggtaaagatgtagtaaatgtgaaagaga 2139750  T
Q  142 gaagtgaat-aaggnnnnnnnnnnttacaaacaaaacatgagaccacacaaacaccattgtatttgaatattttgaaattggttttttggatgaaatact 240  Q
     |||||||| ||||          ||||||||||||| |||||||| |||||||||||||||||||||||||||||| |  || ||||||||||||| ||    
T  2139751 aaagtgaataaaggaaaagaaattttacaaacaaaacttgagaccatacaaacaccattgtatttgaatattttgaactgtgtgttttggatgaaatgct 2139850  T
Q  241 agacacaaacatgttttgaatact 264  Q
    ||||||||||||||||||||||||    
T  2139851 agacacaaacatgttttgaatact 2139874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 26 - 247
Target Start/End: Original strand, 2099769 - 2099991
Alignment:
Q  26 atcagaggctaagttattgatgacaaagccttccttaaattgcaacaaggcatggctttcatattgatgacattttggctgaatttgaggtaaacatgta 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  2099769 atcagaggctaagttattgatgacaaagccttccttaaattgcaacaaggcatggctttcatattgatgacactttggctgaatttgaggaaaacatgta 2099868  T
Q  126 gtaaatgtgaaagagagaagtgaata-aggnnnnnnnnnnttacaaacaaaacatgagaccacacaaacaccattgtatttgaatattttgaaattggtt 224  Q
    ||||||||||||| || ||||||||| |||          |||  ||||||||| ||||||  |||||||||||||||||| ||||||||||| |   |     
T  2099869 gtaaatgtgaaagtgaaaagtgaatacaggaaaagaaattttagtaacaaaacaagagacctgacaaacaccattgtattttaatattttgaagtgaatg 2099968  T
Q  225 ttttggatgaaatactagacaca 247  Q
    ||||||||||||  |||||||||    
T  2099969 ttttggatgaaaagctagacaca 2099991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 23 - 151
Target Start/End: Original strand, 2127026 - 2127154
Alignment:
Q  23 atcatcagaggctaagttattgatgacaaagccttccttaaattgcaacaaggcatggctttcatattgatgacattttggctgaatttgaggtaaacat 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  2127026 atcatcagaggctaagttattgatgacaaagccttccttaaattgcaacaaggcatggctttcatattgatgacactttggctgaatttgaggaaaacat 2127125  T
Q  123 gtagtaaatgtgaaagagagaagtgaata 151  Q
    |||||||||||||||| || |||||||||    
T  2127126 gtagtaaatgtgaaagtgaaaagtgaata 2127154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 42 - 247
Target Start/End: Original strand, 2066958 - 2067164
Alignment:
Q  42 ttgatgacaaagccttccttaaattgcaacaaggcatggctttcatattgatgacattttggctgaatttgaggtaaacatgtagtaaatgtgaaagaga 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||    
T  2066958 ttgatgacaaagccttccttaaattgcaacaaggcatggctttcatattgatgacactttggctgaatttgaggaaaacatgtagtaaatgtgaaacaga 2067057  T
Q  142 gaagtgaat-aaggnnnnnnnnnnttacaaacaaaacatgagaccacacaaacaccattgtatttgaatattttgaaattggttttttggatgaaatact 240  Q
     ||||||||  ||           |||  ||||||||| ||||||  |||||||||||||||||| ||||||||||| |   | ||||||||||||| ||    
T  2067058 aaagtgaatgcagtaaaagaaattttagtaacaaaacaagagacctgacaaacaccattgtattttaatattttgaactgaatgttttggatgaaatgct 2067157  T
Q  241 agacaca 247  Q
    |||||||    
T  2067158 agacaca 2067164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 23 - 217
Target Start/End: Original strand, 2074039 - 2074234
Alignment:
Q  23 atcatcagaggctaagttattgatgacaaagccttccttaaattgcaacaaggcatggctttcatattgatgacattttggctgaatttgaggtaaacat 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||| ||||| ||||||||||| ||||||    
T  2074039 atcatcagaggctaagttattgatgacaaagccttccttaaattgcaacaaggcatggctttcatcaccatgacactttggatgaatttgaggaaaacat 2074138  T
Q  123 gtagtaaatgtgaaagagagaagtgaat-aaggnnnnnnnnnnttacaaacaaaacatgagaccacacaaacaccattgtatttgaatattttgaa 217  Q
    |||||||||| ||||||||  ||||||| |||           |||| ||||||||| ||||||  |||||||||||||||||| |||||||||||    
T  2074139 gtagtaaatgcgaaagagaagagtgaataaagaaaaagaaattttactaacaaaacaagagacctgacaaacaccattgtattttaatattttgaa 2074234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 32 - 152
Target Start/End: Original strand, 2115133 - 2115253
Alignment:
Q  32 ggctaagttattgatgacaaagccttccttaaattgcaacaaggcatggctttcatattgatgacattttggctgaatttgaggtaaacatgtagtaaat 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||| ||||| ||||||||||| |||||||||||||||    
T  2115133 ggctaagttattgatgacaaagccttccttaaattgcaacaaggcatggctttcatcaccatgacactttggatgaatttgaggaaaacatgtagtaaat 2115232  T
Q  132 gtgaaagagagaagtgaataa 152  Q
    |||||||||| ||||||||||    
T  2115233 gtgaaagagaaaagtgaataa 2115253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 30 - 152
Target Start/End: Complemental strand, 2244731 - 2244609
Alignment:
Q  30 gaggctaagttattgatgacaaagccttccttaaattgcaacaaggcatggctttcatattgatgacattttggctgaatttgaggtaaacatgtagtaa 129  Q
    |||||||||||||| ||||||||||||| ||| ||||||||||| || |||||||||||||||||||| ||||||||||||||| | |||||||||||||    
T  2244731 gaggctaagttattaatgacaaagccttgctttaattgcaacaaagcttggctttcatattgatgacactttggctgaatttgatgaaaacatgtagtaa 2244632  T
Q  130 atgtgaaagagagaagtgaataa 152  Q
    |||||||||||| || |||||||    
T  2244631 atgtgaaagagaaaattgaataa 2244609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 2690906 - 2690805
Alignment:
Q  30 gaggctaagttattgatgacaaagccttccttaaattgcaacaaggcatggctttcatattgatgacattttggctgaatttgaggtaaacatgtagtaa 129  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||| ||||||| |||||    
T  2690906 gaggctaggttattgataacaaagccttccttaaattgcaacaaggcatggctttcatatggatgacactttggctgaatttcaggaaaacatgcagtaa 2690807  T
Q  130 at 131  Q
    ||    
T  2690806 at 2690805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 335 - 428
Target Start/End: Original strand, 2139933 - 2140028
Alignment:
Q  335 ctttgttttctattttctagacatttggct--attatttgactcagcaatttgctctgattttcttgctacttgcattcttggaaaacaatttaat 428  Q
    ||||||||||||||||||||||||||| ||  |||||| || || ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2139933 ctttgttttctattttctagacatttgtctctattattggattcggcaatttcctctgattttcttgctacttgcattcttggaaaacaatttaat 2140028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 363 - 428
Target Start/End: Complemental strand, 2690386 - 2690321
Alignment:
Q  363 ctattatttgactcagcaatttgctctgattttcttgctacttgcattcttggaaaacaatttaat 428  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  2690386 ctattatttgactcagcagtttgctctgattttcttgctacttgcatttttggaaaacaatttaat 2690321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 50 - 326
Target Start/End: Original strand, 2058694 - 2058977
Alignment:
Q  50 aaagccttccttaaattgcaacaaggcatggctttcatattgatgacattttggctgaatttgaggtaaacatgtagtaaatgtgaaagagagaagtgaa 149  Q
    |||||||||||||||||| || || |||||||||||||  | |||||| ||||||| ||||  ||  |||||||||||||||||||||| || |||||||    
T  2058694 aaagccttccttaaattgtaagaaagcatggctttcatcatcatgacactttggcttaattaaagaaaaacatgtagtaaatgtgaaagtgaaaagtgaa 2058793  T
Q  150 t-aaggnnnnnnnnnnttacaaacaaaacatgagaccacacaaacacc---attgtatttgaatattttgaaattggttttttggatgaaatactagaca 245  Q
    | ||||          |||||||||||||| ||||||| |||||||||   ||||||| | ||||||||||  |     ||||| ||||||| |||||||    
T  2058794 taaaggaaaagaaattttacaaacaaaacaagagaccagacaaacaccaatattgtatcttaatattttgagctgaaagttttgaatgaaatgctagaca 2058893  T
Q  246 caaac---atgttttgaatactataggaatggactgcatataacaaatgaaaatgatttctagtgaacttgattatcattgacc 326  Q
    || ||    || ||   |||  | ||||||||| || ||||||||||| |||||| ||| ||||||||||||||||||||||||    
T  2058894 catactaagtggttcttatagcaaaggaatggagtgtatataacaaataaaaatgttttgtagtgaacttgattatcattgacc 2058977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 363 - 434
Target Start/End: Original strand, 2074467 - 2074538
Alignment:
Q  363 ctattatttgactcagcaatttgctctgattttcttgctacttgcattcttggaaaacaatttaattgactt 434  Q
    ||||| |||||||||||||||| || ||| ||||||||| ||||||||||||||||||||||||||||||||    
T  2074467 ctattgtttgactcagcaatttcctatgactttcttgcttcttgcattcttggaaaacaatttaattgactt 2074538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 363 - 434
Target Start/End: Original strand, 2100356 - 2100427
Alignment:
Q  363 ctattatttgactcagcaatttgctctgattttcttgctacttgcattcttggaaaacaatttaattgactt 434  Q
    ||||| |||||||||||||||| || ||| ||||||||| ||||||||||||||||||||||||||||||||    
T  2100356 ctattgtttgactcagcaatttcctatgactttcttgcttcttgcattcttggaaaacaatttaattgactt 2100427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 48 - 125
Target Start/End: Complemental strand, 1695756 - 1695679
Alignment:
Q  48 acaaagccttccttaaattgcaacaaggcatggctttcatattgatgacattttggctgaatttgaggtaaacatgta 125  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||| |  ||| |||||||||    
T  1695756 acaaagccttccttaaattgtaacaaggcatggctttcatcttgatgacactttggctgaactaaaggaaaacatgta 1695679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 367 - 428
Target Start/End: Original strand, 2115371 - 2115432
Alignment:
Q  367 tatttgactcagcaatttgctctgattttcttgctacttgcattcttggaaaacaatttaat 428  Q
    |||||||||||||||||| ||||||||||||| ||||||||| | |||||||||||||||||    
T  2115371 tatttgactcagcaatttcctctgattttcttcctacttgcaattttggaaaacaatttaat 2115432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 363 - 426
Target Start/End: Original strand, 2059276 - 2059339
Alignment:
Q  363 ctattatttgactcagcaatttgctctgattttcttgctacttgcattcttggaaaacaattta 426  Q
    ||||| || |||||||||||||||||||||||| |||||||||||||| || ||||||||||||    
T  2059276 ctattgttagactcagcaatttgctctgatttttttgctacttgcattttttgaaaacaattta 2059339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 428
Target Start/End: Original strand, 2127572 - 2127631
Alignment:
Q  369 tttgactcagcaatttgctctgattttcttgctacttgcattcttggaaaacaatttaat 428  Q
    |||||||||||||||| |||| | |||||||||||||||||  |||||||||||||||||    
T  2127572 tttgactcagcaatttcctctaagtttcttgctacttgcatctttggaaaacaatttaat 2127631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 369 - 428
Target Start/End: Original strand, 2067598 - 2067657
Alignment:
Q  369 tttgactcagcaatttgctctgattttcttgctacttgcattcttggaaaacaatttaat 428  Q
    |||||||||||||||| | || | |||||||||||||||||  |||||||||||||||||    
T  2067598 tttgactcagcaatttccgctaagtttcttgctacttgcatctttggaaaacaatttaat 2067657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 326
Target Start/End: Original strand, 2067185 - 2067224
Alignment:
Q  287 aaatgaaaatgatttctagtgaacttgattatcattgacc 326  Q
    ||||||||||| ||||||||||| ||||||||||||||||    
T  2067185 aaatgaaaatgttttctagtgaatttgattatcattgacc 2067224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 438 - 484
Target Start/End: Original strand, 2140152 - 2140197
Alignment:
Q  438 tctagaactgactgtccatgtaagagcttgcacaaatttattgaaaa 484  Q
    ||||||||||||||||||| ||||||||||| |||||||||| ||||    
T  2140152 tctagaactgactgtccat-taagagcttgctcaaatttattcaaaa 2140197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 479
Target Start/End: Complemental strand, 2244041 - 2244000
Alignment:
Q  438 tctagaactgactgtccatgtaagagcttgcacaaatttatt 479  Q
    ||||||||||||| ||||||||| ||||||||||| ||||||    
T  2244041 tctagaactgactatccatgtaaaagcttgcacaattttatt 2244000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 24031851 - 24031897
Alignment:
Q  50 aaagccttccttaaattgcaacaaggcatggctttcatattgatgac 96  Q
    |||| ||||||||| |||||||| ||||||||||||||||| |||||    
T  24031851 aaagtcttccttaacttgcaacagggcatggctttcatattcatgac 24031897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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