View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8778_6 (Length: 313)

Name: NF8778_6
Description: NF8778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8778_6
NF8778_6
[»] chr6 (7 HSPs)
chr6 (1-232)||(15576375-15576606)
chr6 (2-162)||(16526933-16527093)
chr6 (2-165)||(15574544-15574708)
chr6 (16-161)||(12972738-12972883)
chr6 (98-233)||(17860693-17860828)
chr6 (5-125)||(8322602-8322722)
chr6 (255-313)||(16527772-16527827)
[»] chr7 (8 HSPs)
chr7 (5-231)||(21471401-21471628)
chr7 (3-162)||(5722004-5722164)
chr7 (4-127)||(7955796-7955920)
chr7 (255-313)||(7494584-7494642)
chr7 (8-160)||(1074076-1074229)
chr7 (255-313)||(7956058-7956116)
chr7 (259-313)||(21471674-21471728)
chr7 (3-55)||(16166702-16166754)
[»] chr8 (11 HSPs)
chr8 (4-235)||(16052557-16052789)
chr8 (2-168)||(28901685-28901851)
chr8 (6-142)||(22894905-22895042)
chr8 (94-235)||(24119925-24120066)
chr8 (1-188)||(12755799-12755987)
chr8 (97-154)||(5570508-5570565)
chr8 (263-307)||(22894724-22894768)
chr8 (255-306)||(28901531-28901582)
chr8 (96-162)||(28292459-28292525)
chr8 (259-313)||(28973519-28973573)
chr8 (4-119)||(17099875-17099990)
[»] chr5 (11 HSPs)
chr5 (4-231)||(24841367-24841594)
chr5 (2-235)||(11274630-11274863)
chr5 (2-162)||(22754557-22754718)
chr5 (2-180)||(17027137-17027316)
chr5 (2-235)||(23125219-23125454)
chr5 (4-145)||(19331173-19331315)
chr5 (255-313)||(24841626-24841684)
chr5 (256-309)||(22754829-22754882)
chr5 (260-307)||(11274548-11274595)
chr5 (280-313)||(11274514-11274547)
chr5 (255-308)||(22644052-22644105)
[»] chr4 (6 HSPs)
chr4 (63-187)||(1696893-1697017)
chr4 (255-313)||(1676479-1676537)
chr4 (255-313)||(1683007-1683065)
chr4 (8-57)||(15787861-15787910)
chr4 (255-313)||(1696751-1696809)
chr4 (255-313)||(34850752-34850810)
[»] chr3 (6 HSPs)
chr3 (2-231)||(11520741-11520971)
chr3 (4-144)||(5632859-5633000)
chr3 (255-313)||(5632674-5632732)
chr3 (255-313)||(13911138-13911196)
chr3 (256-313)||(21017750-21017807)
chr3 (71-119)||(8770880-8770928)
[»] chr1 (10 HSPs)
chr1 (2-82)||(23223139-23223220)
chr1 (255-313)||(21451999-21452057)
chr1 (109-231)||(21452099-21452221)
chr1 (255-313)||(23223284-23223342)
chr1 (153-235)||(30675235-30675317)
chr1 (255-313)||(31313425-31313483)
chr1 (3-79)||(31313020-31313097)
chr1 (4-55)||(27754786-27754837)
chr1 (31-100)||(14397286-14397356)
chr1 (1-55)||(31313107-31313161)
[»] chr2 (8 HSPs)
chr2 (21-127)||(39730111-39730217)
chr2 (2-127)||(22389140-22389265)
chr2 (96-188)||(17415496-17415588)
chr2 (111-231)||(28278704-28278823)
chr2 (255-313)||(28278606-28278664)
chr2 (255-313)||(31449830-31449888)
chr2 (255-313)||(22388940-22388997)
chr2 (259-313)||(39730324-39730378)
[»] scaffold0990 (1 HSPs)
scaffold0990 (64-167)||(3134-3237)
[»] scaffold1026 (2 HSPs)
scaffold1026 (21-157)||(2186-2323)
scaffold1026 (257-313)||(2015-2071)
[»] scaffold0282 (1 HSPs)
scaffold0282 (259-313)||(22729-22783)


Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 15576606 - 15576375
Alignment:
Q  1 gaccttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactgagtgtgacaaatgccttgaccagccccatcggcttta 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  15576606 gaccttgaatgtctatttcgaattgcttcaatctcatagtaaggtacaatcacatgatggctgagtgtgacaaatgccttgaccagccccaccggcttta 15576507  T
Q  101 ggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaatatagttacgtc 200  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15576506 ggaggtatatacgtgtatcttggaattttatttggttgaaagtaattgtatcttctctaagtttgttcctcttgcatggaaatggtaatatagttacgtc 15576407  T
Q  201 tgatggtgggatgagtgacaatctgagcaaaa 232  Q
    ||| ||||||||||||||||||||||||||||    
T  15576406 tgacggtgggatgagtgacaatctgagcaaaa 15576375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 2 - 162
Target Start/End: Original strand, 16526933 - 16527093
Alignment:
Q  2 accttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggcttta 100  Q
    ||||||||||||| ||||||||||||| ||| | |||| ||||||||||||||||| |||| |||||||| | ||| ||||||||| ||||  | |||||    
T  16526933 accttgaatgtctgtttagaattgctttaatgttatagaaaggtacaatcacatgacgactggagtgtgaaatatgtcttgaccag-cccactgacttta 16527031  T
Q  101 ggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagt 162  Q
     |||||||||| |||||||||| |||| ||| ||||||||| |||  |||||||||||||||    
T  16527032 agaggtacatatgtgtatcttgaaattgtatgtggttgaaattaagagtatcttctctaagt 16527093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 165
Target Start/End: Original strand, 15574544 - 15574708
Alignment:
Q  2 accttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggcttta 100  Q
    ||||||||||||||| || ||||||||||||||||||| ||| |||||||||||||  | | |||||||  |||||| ||||||||  |||   ||||||    
T  15574544 accttgaatgtctatgtataattgcttcaatctcatagcaagatacaatcacatgacaagtagagtgtggtaaatgctttgaccagtgccacaagcttta 15574643  T
Q  101 ggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttg 165  Q
    | || |||||| ||||||||||||||  ||| |||||||||||||  ||||| ||||||||||||    
T  15574644 gaagatacatatgtgtatcttggaatcatatgtggttgaaagtaagagtatcctctctaagtttg 15574708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 12972883 - 12972738
Alignment:
Q  16 tttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggctttaggaggtacatacgt 114  Q
    |||||||||| ||||||||||||| |||||||||||||||||||| | ||||||| ||||||||||||||||| | | | | |||| || | |||||| |    
T  12972883 tttagaattgattcaatctcatagcaaggtacaatcacatgatgattggagtgtggcaaatgccttgaccagcacta-ctgatttaagaagaacatacat 12972785  T
Q  115 gtatcttggaattttatctggttgaaagtaattgtatcttctctaag 161  Q
    |||||||||||||| |  | |||||||||||  ||||||||||||||    
T  12972784 gtatcttggaatttcaagtagttgaaagtaagggtatcttctctaag 12972738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 233
Target Start/End: Complemental strand, 17860828 - 17860693
Alignment:
Q  98 ttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaatatagttac 197  Q
    |||||||||||||| |||||| || ||||| ||| |||||||||||||  |||| ||||||||   |||||  |||||||||||  |||||  ||||||     
T  17860828 ttaggaggtacatatgtgtatattagaattgtatgtggttgaaagtaagagtatgttctctaaaaatgttccgcttgcatggaagaggtaagctagttaa 17860729  T
Q  198 gtctgatggtgggatgagtgacaatctgagcaaaat 233  Q
    |||||||| ||||  || | | ||||||||||||||    
T  17860728 gtctgatgatgggtggaataaaaatctgagcaaaat 17860693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 125
Target Start/End: Original strand, 8322602 - 8322722
Alignment:
Q  5 ttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactg-agtgtgacaaatgccttgaccagccccatcggctttagga 103  Q
    |||||||||  |||||||||| |||||  |||||| |||||||| |||| ||| ||||| | || || ||||| | |||||||||| |  | ||||||||    
T  8322602 ttgaatgtccgtttagaattgtttcaaattcatagcaaggtacattcacgtgacgactggaatgaga-aaatgtcgtgaccagcccaactgactttagga 8322700  T
Q  104 ggtacatacgtgtatcttggaa 125  Q
    ||| ||||||||||||||||||    
T  8322701 ggtgcatacgtgtatcttggaa 8322722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 313
Target Start/End: Original strand, 16527772 - 16527827
Alignment:
Q  255 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttg 313  Q
    |||||||| |||||||||   ||| |||||||||||||| |||||||||||||||||||    
T  16527772 attctaacgtcttgctat---gttgcttgaggacaagaaccggtttaagtttggggttg 16527827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 7e-52; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 5 - 231
Target Start/End: Original strand, 21471401 - 21471628
Alignment:
Q  5 ttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactg-agtgtgacaaatgccttgaccagccccatcggctttagga 103  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| || |||||||||||||||||||||| || |||||||    
T  21471401 ttgaatgtctatttagaattgcttcaatctcatagcaaggtacaatcacatgacgactggagtatggcaaatgccttgaccagccccattggatttagga 21471500  T
Q  104 ggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaatatagttacgtctga 203  Q
    |  |||||| |||||||||||||| ||  |||||||||||||  ||||| |||||||||||| ||  |||||||| |  ||||||  |||| | || |||    
T  21471501 gacacatacatgtatcttggaattgtacgtggttgaaagtaagagtatcctctctaagtttgatccacttgcatgaaggtggtaagctagtcaagtttga 21471600  T
Q  204 tggtgggatgagtgacaatctgagcaaa 231  Q
    | |||||| || ||||||||||||||||    
T  21471601 tagtgggaggaatgacaatctgagcaaa 21471628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 3 - 162
Target Start/End: Original strand, 5722004 - 5722164
Alignment:
Q  3 ccttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggctttag 101  Q
    ||||||||| ||||||||||||||||||||||||||| ||| |||||||| ||||  ||| |||||||||||||  |||  ||| |||||  | ||||||    
T  5722004 ccttgaatgcctatttagaattgcttcaatctcatagcaagatacaatcaaatgactactggagtgtgacaaatttctttcccatccccactgactttag 5722103  T
Q  102 gaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagt 162  Q
    ||| |||||||||||||||||||||| ||  |||||||||| ||  |||||||||||||||    
T  5722104 gagatacatacgtgtatcttggaattgtaagtggttgaaagcaagagtatcttctctaagt 5722164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 127
Target Start/End: Original strand, 7955796 - 7955920
Alignment:
Q  4 cttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggctttagg 102  Q
    ||||| ||||| ||| ||||||||| | |||||||  |||||||||||||||||||||| ||||| | ||||||||||||  |||||  | |  ||||||    
T  7955796 cttgagtgtctgtttggaattgctttagtctcataacaaggtacaatcacatgatgactggagtggggcaaatgccttgagaagccctgttgaatttagg 7955895  T
Q  103 aggtacatacgtgtatcttggaatt 127  Q
    ||||||| |||||||||||||||||    
T  7955896 aggtacacacgtgtatcttggaatt 7955920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 255 - 313
Target Start/End: Original strand, 7494584 - 7494642
Alignment:
Q  255 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttg 313  Q
    ||||| |||||||||||||||||| |||||||||||| ||| ||||||||||| |||||    
T  7494584 attctgacttcttgctattgtgttgcttgaggacaagcaacagtttaagtttgtggttg 7494642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 160
Target Start/End: Original strand, 1074076 - 1074229
Alignment:
Q  8 aatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggctttaggaggt 106  Q
    ||||||| |||  ||||||||||||||||||  ||||||||||||||||| | || |||||||  |||||||| ||||   | ||| | |||||||||||    
T  1074076 aatgtctgtttgaaattgcttcaatctcataacaaggtacaatcacatgacgtctggagtgtggaaaatgcctagacctttcacattgactttaggaggt 1074175  T
Q  107 acatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaa 160  Q
    ||||| |||  ||||| ||||  |  || ||||||||||  |||| ||||||||    
T  1074176 acatatgtgcgtcttgtaattggaagtgattgaaagtaagagtatattctctaa 1074229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 313
Target Start/End: Original strand, 7956058 - 7956116
Alignment:
Q  255 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttg 313  Q
    |||||| | ||||| |||| |||| ||| ||||||||||||| ||||||||||||||||    
T  7956058 attctaccgtcttgatattttgttgcttcaggacaagaaacgatttaagtttggggttg 7956116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 313
Target Start/End: Original strand, 21471674 - 21471728
Alignment:
Q  259 taacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttg 313  Q
    |||||||| |||||||| || |||||||||||  ||| |||||||||||||||||    
T  21471674 taacttctagctattgtattgcttgaggacaatcaacagtttaagtttggggttg 21471728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 16166702 - 16166754
Alignment:
Q  3 ccttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacat 55  Q
    |||||||||||| |||||||||| |||||| | ||| || |||||||||||||    
T  16166702 ccttgaatgtctgtttagaattgtttcaattttataatatggtacaatcacat 16166754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 5e-50; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 4 - 235
Target Start/End: Complemental strand, 16052789 - 16052557
Alignment:
Q  4 cttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactga-gtgtgacaaatgccttgaccagccccatcggctttagg 102  Q
    ||||||||||| ||| |||||||||||||||||||| ||||||||||||||||| || ||| ||||| ||||||||||||||| |||||   ||||||||    
T  16052789 cttgaatgtctgtttcgaattgcttcaatctcatagcaaggtacaatcacatgacgattgaagtgtggcaaatgccttgaccaaccccactagctttagg 16052690  T
Q  103 aggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaatatagttacgtctg 202  Q
    ||||||||||| ||||||||||||| ||| |||||||||||||   |||  ||| ||||| |||||| ||||||| ||| ||||||  |||||| || ||    
T  16052689 aggtacatacgcgtatcttggaattgtatgtggttgaaagtaagaatatactctttaagtctgttcagcttgcatagaagtggtaagctagttaagtttg 16052590  T
Q  203 atggtgggatgagtgacaatctgagcaaaatct 235  Q
    ||| ||||| ||||| |||||||||| ||||||    
T  16052589 atgatgggaagagtggcaatctgagccaaatct 16052557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 2 - 168
Target Start/End: Complemental strand, 28901851 - 28901685
Alignment:
Q  2 accttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactga-gtgtgacaaatgccttgaccagccccatcggcttta 100  Q
    ||||| || ||||||||||||| ||||||||||| ||| ||| ||||||||||||| |||  | | ||||||||| ||||||||| |||||  || ||||    
T  28901851 accttaaaagtctatttagaat-gcttcaatctcgtagcaagatacaatcacatgacgacaaacgagtgacaaattccttgaccaaccccaatggtttta 28901753  T
Q  101 ggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttc 168  Q
    |||| |||||||||||||||||||||| ||| |||||||||||||  |||||||||||||| ||||||    
T  28901752 ggagatacatacgtgtatcttggaattgtatgtggttgaaagtaagagtatcttctctaagcttgttc 28901685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 6 - 142
Target Start/End: Complemental strand, 22895042 - 22894905
Alignment:
Q  6 tgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactg-agtgtgacaaatgccttgaccagccccatcggctttaggag 104  Q
    ||||||||| |||||||| ||||||||||||||| |||||||||||| | ||  |||| |||||| ||||||||||||| |||| ||   ||||||||||    
T  22895042 tgaatgtctgtttagaatggcttcaatctcatagaaaggtacaatcatacgacaactggagtgtggcaaatgccttgactagcctcactagctttaggag 22894943  T
Q  105 gtacatacgtgtatcttggaattttatctggttgaaag 142  Q
     ||||||||||| |||||||||| ||| ||||||||||    
T  22894942 atacatacgtgtgtcttggaattgtatgtggttgaaag 22894905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 94 - 235
Target Start/End: Original strand, 24119925 - 24120066
Alignment:
Q  94 ggctttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaatatag 193  Q
    |||||| | ||||||||||||||||||||||||| ||| | ||| |||||||  ||||||||||| ||| |||||  ||||||||||| ||||||  |||    
T  24119925 ggctttggcaggtacatacgtgtatcttggaattatatgtcgtttaaagtaagagtatcttctcttagtctgttctgcttgcatggaagtggtaagctag 24120024  T
Q  194 ttacgtctgatggtgggatgagtgacaatctgagcaaaatct 235  Q
    |||   ||| |||||| | |||||||||||||||| ||||||    
T  24120025 ttaaacctgttggtggaaagagtgacaatctgagccaaatct 24120066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 12755799 - 12755987
Alignment:
Q  1 gaccttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactgag-tgtgacaaatgccttgaccagccccatcggcttt 99  Q
    |||||||||||||| ||||||||| ||| ||||  |||| ||||||||| || |||| || |||  |||||||||||  ||||||| | |||   |||||    
T  12755799 gaccttgaatgtctgtttagaattcctttaatcctatagcaaggtacaaccatatgacgaatgaaatgtgacaaatgttttgaccaactccactagcttt 12755898  T
Q  100 aggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaa 188  Q
    | ||| |||||| || |||||||||||| || | ||||||||||||  ||||||||||||||  ||| |  ||||||||||| ||||||    
T  12755899 atgagatacatatgtatatcttggaattgtaaccggttgaaagtaagagtatcttctctaagaatgtcccacttgcatggaagtggtaa 12755987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 5570565 - 5570508
Alignment:
Q  97 tttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatctt 154  Q
    |||||||| || |||||||||||||| |||| ||| |||||||||||||| |||||||    
T  5570565 tttaggagatatatacgtgtatcttgaaattgtatgtggttgaaagtaatagtatctt 5570508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 22894768 - 22894724
Alignment:
Q  263 ttcttgctattgtgtttcttgaggacaagaaacggtttaagtttg 307  Q
    |||||||||||||||||||||||||||||  || |||||||||||    
T  22894768 ttcttgctattgtgtttcttgaggacaagggacagtttaagtttg 22894724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 28901582 - 28901531
Alignment:
Q  255 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagttt 306  Q
    ||||||||||||||||| |||||| |||||| ||||| |||| |||||||||    
T  28901582 attctaacttcttgctactgtgttgcttgagaacaagcaacgatttaagttt 28901531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 28292525 - 28292459
Alignment:
Q  96 ctttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagt 162  Q
    |||||||||||| ||||||||||||| ||||| ||  ||||||||| |||  ||||||||| |||||    
T  28292525 ctttaggaggtagatacgtgtatctttgaattataagtggttgaaattaagagtatcttctttaagt 28292459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 313
Target Start/End: Complemental strand, 28973573 - 28973519
Alignment:
Q  259 taacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttg 313  Q
    |||||||||| |||||||||||||   |||||| ||| |||||||||||||||||    
T  28973573 taacttcttgttattgtgtttcttaccgacaagcaactgtttaagtttggggttg 28973519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 17099875 - 17099990
Alignment:
Q  4 cttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactg-agtgtgacaaatgccttgaccagccccatcggctttagg 102  Q
    ||||| ||||| |||||||||| |||||  | |||| |||||||| |||  ||| ||||| |||| ||||||||   |||||||||| |  |||||||||    
T  17099875 cttgattgtctgtttagaattgtttcaaatttatagcaaggtacattcatgtgacgactggagtg-gacaaatggtgtgaccagccctactggctttagg 17099973  T
Q  103 aggtacatacgtgtatc 119  Q
    || ||||||||||||||    
T  17099974 agatacatacgtgtatc 17099990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 24841367 - 24841594
Alignment:
Q  4 cttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggctttagg 102  Q
    ||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||| ||||||||||||||| |  |||||||    
T  24841367 cttgaatgtttgtttagaattgcttcaatctcatagtaaggtccaatcacatgatgactaaagtgtgacaaatcccttgaccagcccca-cttctttagg 24841465  T
Q  103 aggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaatatagttacgtctg 202  Q
     | |||||| ||||||||||||||| ||| |||||||||||||  |||||||| ||||| || |||  ||||||||||| ||||||  |||| | ||| |    
T  24841466 tgatacatatgtgtatcttggaattgtatgtggttgaaagtaagagtatcttccctaagcttcttctacttgcatggaagtggtaagctagtcaagtcag 24841565  T
Q  203 atggtgggatgagtgacaatctgagcaaa 231  Q
    || ||| || || | ||||||||||||||    
T  24841566 atagtgagaagaataacaatctgagcaaa 24841594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 2 - 235
Target Start/End: Complemental strand, 11274863 - 11274630
Alignment:
Q  2 accttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggcttta 100  Q
    ||||||||||| | ||| |||| |||||||| ||||||||||||| ||||||||||  ||| |||||||||||| |||||||||| |||| | |||||||    
T  11274863 accttgaatgtttgtttggaatcgcttcaatttcatagtaaggtaaaatcacatgacaactagagtgtgacaaacgccttgaccatccccct-ggcttta 11274765  T
Q  101 ggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaatatagttacgtc 200  Q
    |||| ||| || ||||||||||||||| ||| |||||||||||||  |||||||||| |||| |||||  |||||||| ||   ||||  |||||| |||    
T  11274764 ggagatacctatgtgtatcttggaattgtatgtggttgaaagtaaaagtatcttctcaaagtctgttctgcttgcatgaaagcagtaagctagttaagtc 11274665  T
Q  201 tgatggtgggatgagtgacaatctgagcaaaatct 235  Q
    ||||||||| | || ||||||| ||||||||||||    
T  11274664 tgatggtggaaagaatgacaatatgagcaaaatct 11274630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 2 - 162
Target Start/End: Original strand, 22754557 - 22754718
Alignment:
Q  2 accttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactg-agtgtgacaaatgccttgaccagccccatcggcttta 100  Q
    |||||||||| || ||||||||| ||||||||| |||| ||||||||||||||||| ||||| |||||| ||||||| ||||||| ||| || | |||||    
T  22754557 accttgaatgcctgtttagaatttcttcaatcttatagcaaggtacaatcacatgacgactggagtgtggcaaatgctttgaccaaccctattgacttta 22754656  T
Q  101 ggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagt 162  Q
    |||||||||||||||||||||||||| |||| |||||||||||||   |||| |||||||||    
T  22754657 ggaggtacatacgtgtatcttggaatattatatggttgaaagtaagaatatcctctctaagt 22754718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 2 - 180
Target Start/End: Original strand, 17027137 - 17027316
Alignment:
Q  2 accttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactg-agtgtgacaaatgccttgaccagccccatcggcttta 100  Q
    ||||||| ||||| |||| |||||||| ||| |||||| |||| |||||||||||| ||||| ||| |||||||||| |||| ||||||||   ||||||    
T  17027137 accttgagtgtctgtttataattgcttaaatgtcataggaaggaacaatcacatgacgactggagtatgacaaatgcattgatcagccccactagcttta 17027236  T
Q  101 ggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatgga 180  Q
    |||||||||||| |||||||||||||| ||  ||||||||| |||  ||||||||||||| | |||||  ||||||||||    
T  17027237 ggaggtacatacatgtatcttggaattgtacgtggttgaaaataagagtatcttctctaactgtgttccgcttgcatgga 17027316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 235
Target Start/End: Complemental strand, 23125454 - 23125219
Alignment:
Q  2 accttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggcttta 100  Q
    ||||||| ||| | |||||||||| |||||||||| || || ||||||||||||||  ||| ||||||| ||| | ||||||||| |||||    |||||    
T  23125454 accttgagtgtatgtttagaattgtttcaatctcacagcaaagtacaatcacatgacaactggagtgtggcaagttccttgaccaaccccactatcttta 23125355  T
Q  101 ggaggtacatacgtgtatcttggaattttatctggttgaaagtaat-tgtatcttctctaagtttgttcatcttgcatggaaatggtaatatagttacgt 199  Q
     |||||||||| ||||||||||||||| ||  || ||| |||||||  |||||||||||||| |||| |  ||||||||||| ||||||  |||| | ||    
T  23125354 tgaggtacatatgtgtatcttggaattgtaagtgattggaagtaataagtatcttctctaagcttgtcccgcttgcatggaagtggtaagttagtcaagt 23125255  T
Q  200 ctgatggtgggatgagtgacaatctgagcaaaatct 235  Q
    |||   |||||| || ||||||| |||||| |||||    
T  23125254 ctggaagtgggaagaatgacaatatgagcacaatct 23125219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 4 - 145
Target Start/End: Original strand, 19331173 - 19331315
Alignment:
Q  4 cttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggctttagg 102  Q
    ||||||||||| | || |||||||||||||||| || |||||| |||||||||| | || ||||||||||||||| || |||| ||  |  |  ||||||    
T  19331173 cttgaatgtctctatataattgcttcaatctcaaagcaaggtagaatcacatgacggctggagtgtgacaaatgctttcaccaaccatactgattttagg 19331272  T
Q  103 aggtacatacgtgtatcttggaattttatctggttgaaagtaa 145  Q
    ||||||||| |||||| |||||||| ||  |||||||||||||    
T  19331273 aggtacatatgtgtattttggaattgtaagtggttgaaagtaa 19331315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 313
Target Start/End: Original strand, 24841626 - 24841684
Alignment:
Q  255 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttg 313  Q
    |||||||||||||| |||||||||||||||||||||| ||| || || || ||||||||    
T  24841626 attctaacttcttgttattgtgtttcttgaggacaagcaacagtgtacgtatggggttg 24841684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 256 - 309
Target Start/End: Original strand, 22754829 - 22754882
Alignment:
Q  256 ttctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggg 309  Q
    ||||||||| ||||||||||||| |||| |||||||||||  ||||||||||||    
T  22754829 ttctaactttttgctattgtgttgcttgtggacaagaaacattttaagtttggg 22754882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 307
Target Start/End: Complemental strand, 11274595 - 11274548
Alignment:
Q  260 aacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttg 307  Q
    |||||||||||| |||||| |||||||||||| ||| |||||||||||    
T  11274595 aacttcttgctactgtgttgcttgaggacaagtaacagtttaagtttg 11274548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 313
Target Start/End: Complemental strand, 11274547 - 11274514
Alignment:
Q  280 cttgaggacaagaaacggtttaagtttggggttg 313  Q
    |||||||||||| |||||||||||||||||||||    
T  11274547 cttgaggacaagcaacggtttaagtttggggttg 11274514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 308
Target Start/End: Complemental strand, 22644105 - 22644052
Alignment:
Q  255 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttgg 308  Q
    |||| |||||||||| ||| |||| |||||||| ||| ||||||||||||||||    
T  22644105 attccaacttcttgccattttgttgcttgaggataagcaacggtttaagtttgg 22644052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 63 - 187
Target Start/End: Complemental strand, 1697017 - 1696893
Alignment:
Q  63 gagtgtgacaaatgccttgaccagccccatcggctttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagt 162  Q
    ||||||| |||||||||||||||||||||  |||||||| ||||||||| ||||||||||||||| ||| |||||||||||||  ||||| |||||||||    
T  1697017 gagtgtggcaaatgccttgaccagccccactggctttagaaggtacatatgtgtatcttggaattgtatgtggttgaaagtaaaagtatcctctctaagt 1696918  T
Q  163 ttgttcatcttgcatggaaatggta 187  Q
    ||||||  ||||||||||| |||||    
T  1696917 ttgttctgcttgcatggaagtggta 1696893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 313
Target Start/End: Complemental strand, 1676537 - 1676479
Alignment:
Q  255 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttg 313  Q
    ||||||||||||||||| |||||| ||||| |||| | ||| |||||||||||||||||    
T  1676537 attctaacttcttgctactgtgttgcttgaagacatgcaacagtttaagtttggggttg 1676479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 313
Target Start/End: Complemental strand, 1683065 - 1683007
Alignment:
Q  255 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttg 313  Q
    ||||||||||||||||| |||||| ||||| |||| | ||| |||||||||||||||||    
T  1683065 attctaacttcttgctactgtgttgcttgaagacatgcaacagtttaagtttggggttg 1683007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 15787910 - 15787861
Alignment:
Q  8 aatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatga 57  Q
    |||||||||||| ||||| ||||||||||||| |||||||||||| ||||    
T  15787910 aatgtctatttaaaattgattcaatctcatagcaaggtacaatcaaatga 15787861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 313
Target Start/End: Complemental strand, 1696809 - 1696751
Alignment:
Q  255 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttg 313  Q
    ||||||||||||||||| |||||| ||||| || ||| ||| ||||||||||| |||||    
T  1696809 attctaacttcttgctactgtgttgcttgaagataagcaacagtttaagtttgaggttg 1696751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 313
Target Start/End: Original strand, 34850752 - 34850810
Alignment:
Q  255 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttg 313  Q
    |||||||||||||| |||||||||||||| | ||||| ||| |||||| ||||| ||||    
T  34850752 attctaacttcttgttattgtgtttcttgcgaacaagcaacagtttaaatttggagttg 34850810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 2 - 231
Target Start/End: Original strand, 11520741 - 11520971
Alignment:
Q  2 accttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggcttta 100  Q
    |||||||||||||  ||| ||||||||||||||||||| |||||||||||| |||| |||| ||||||| |||||||||||||||| ||||   | ||||    
T  11520741 accttgaatgtctgcttataattgcttcaatctcatagcaaggtacaatcatatgacgactagagtgtggcaaatgccttgaccagtcccactagattta 11520840  T
Q  101 ggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaatatagttacgtc 200  Q
    | || |||||||||||||||| ||||| | | |||||||||||||  |||||  |||||||||||  |   ||| |||||  ||||||  |||| | ||     
T  11520841 gaagatacatacgtgtatctttgaattgtttgtggttgaaagtaagagtatccactctaagtttgaactggttgtatggatgtggtaagctagtcaagtt 11520940  T
Q  201 tgatggtgggatgagtgacaatctgagcaaa 231  Q
    |||| |||||| || ||||||||||||||||    
T  11520941 tgatagtgggaggaatgacaatctgagcaaa 11520971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 5633000 - 5632859
Alignment:
Q  4 cttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactg-agtgtgacaaatgccttgaccagccccatcggctttagg 102  Q
    ||||||||| | ||||||||||||||||||| || | |||||| ||| |||| | ||||| |||||||||||| ||||||  |   | | || |||||||    
T  5633000 cttgaatgtatgtttagaattgcttcaatctaattgcaaggtataattacattacgactgcagtgtgacaaattccttgattatgtctaccgactttagg 5632901  T
Q  103 aggtacatacgtgtatcttggaattttatctggttgaaagta 144  Q
    ||||||||||||||||||||||||| ||  ||||||||||||    
T  5632900 aggtacatacgtgtatcttggaattgtaagtggttgaaagta 5632859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 255 - 313
Target Start/End: Complemental strand, 5632732 - 5632674
Alignment:
Q  255 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttg 313  Q
    ||||||||||||||| ||| |||| |||| ||||||| |||||||||||||||||||||    
T  5632732 attctaacttcttgccattttgttgcttggggacaagcaacggtttaagtttggggttg 5632674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 255 - 313
Target Start/End: Original strand, 13911138 - 13911196
Alignment:
Q  255 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttg 313  Q
    |||||||||| ||||||||||||| ||| |||||||| |||||||||||||| ||||||    
T  13911138 attctaacttattgctattgtgttactttaggacaagcaacggtttaagtttagggttg 13911196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 256 - 313
Target Start/End: Original strand, 21017750 - 21017807
Alignment:
Q  256 ttctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttg 313  Q
    ||||||||||||| ||||||||| ||| |||||||| |||| |||||||||| |||||    
T  21017750 ttctaacttcttgttattgtgttgcttaaggacaagcaacgatttaagtttgaggttg 21017807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 8770928 - 8770880
Alignment:
Q  71 caaatgccttgaccagccccatcggctttaggaggtacatacgtgtatc 119  Q
    |||||||| |||||||||| |  ||||||||||| ||||||||||||||    
T  8770928 caaatgccgtgaccagccctactggctttaggagatacatacgtgtatc 8770880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 23223139 - 23223220
Alignment:
Q  2 accttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttga 82  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| || | ||||||| ||||||||||||    
T  23223139 accttgaatgtctatttagaattgctttaatctcatagcaaggtacaatcacatgacgattggagtgtggcaaatgccttga 23223220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 255 - 313
Target Start/End: Complemental strand, 21452057 - 21451999
Alignment:
Q  255 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttg 313  Q
    ||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||    
T  21452057 attctaacttcttgctattgtgtttcttgaggacaagtaatagtttaagtttggggttg 21451999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 231
Target Start/End: Complemental strand, 21452221 - 21452099
Alignment:
Q  109 atacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaatatagttacgtctgatggtg 208  Q
    ||||||||||||| ||||| ||| |||||||||||||  ||||| ||||||| |||| ||  ||||||||||  ||||||  |||| | || |||| |||    
T  21452221 atacgtgtatctttgaattgtatgtggttgaaagtaagagtatcctctctaaatttgatctgcttgcatggaggtggtaacctagtcaagtttgatagtg 21452122  T
Q  209 ggatgagtgacaatctgagcaaa 231  Q
    ||| || ||| ||||||||||||    
T  21452121 ggaggaatgaaaatctgagcaaa 21452099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 255 - 313
Target Start/End: Original strand, 23223284 - 23223342
Alignment:
Q  255 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttg 313  Q
    ||||||||||||| |||||||||| ||| ||||||||||||  ||||||||||||||||    
T  23223284 attctaacttctttctattgtgttgcttaaggacaagaaacaatttaagtttggggttg 23223342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 235
Target Start/End: Original strand, 30675235 - 30675317
Alignment:
Q  153 ttctctaagtttgttcatcttgcatggaaatggtaatatagttacgtctgatggtgggatgagtgacaatctgagcaaaatct 235  Q
    |||| |||||||||||   |||||| ||| ||||||  |||||| || ||||||||||| || ||||||||||||||||||||    
T  30675235 ttctataagtttgttccaattgcatagaagtggtaagttagttaagtttgatggtgggaagaatgacaatctgagcaaaatct 30675317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 313
Target Start/End: Original strand, 31313425 - 31313483
Alignment:
Q  255 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttg 313  Q
    ||||||| ||||||||||| |||| | |||||||||| ||| |||||||||||||||||    
T  31313425 attctaatttcttgctattttgttgcctgaggacaagcaacagtttaagtttggggttg 31313483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 31313020 - 31313097
Alignment:
Q  3 ccttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgcct 79  Q
    |||||| |||||||||||||||| || |||||||||| |||||||||| |||| | || | ||||||| |||||||||    
T  31313020 ccttgattgtctatttagaattggtttaatctcatagcaaggtacaataacatcacgattggagtgtggcaaatgcct 31313097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 27754786 - 27754837
Alignment:
Q  4 cttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacat 55  Q
    ||||||| ||| |||||||||| |||||| ||||||||| ||||||||||||    
T  27754786 cttgaatttctgtttagaattgtttcaatatcatagtaacgtacaatcacat 27754837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 14397286 - 14397356
Alignment:
Q  31 atctcatagtaaggtacaatcacatgatgactg-agtgtgacaaatgccttgaccagccccatcggcttta 100  Q
    ||||||||| ||||||||||||||||| ||| | |||||| ||||| |||||||||| | ||| |||||||    
T  14397286 atctcatagcaaggtacaatcacatgacgacggtagtgtggcaaataccttgaccagtctcattggcttta 14397356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 31313161 - 31313107
Alignment:
Q  1 gaccttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacat 55  Q
    |||||||| ||||||||||||||||||| |||||||||   ||||||||| ||||    
T  31313161 gaccttgattgtctatttagaattgctttaatctcataaccaggtacaataacat 31313107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 39730111 - 39730217
Alignment:
Q  21 aattgcttcaatctcatagtaaggtacaatcacatgatgac-tgagtgtgacaaatgccttgaccagccccatcggctttaggaggtacatacgtgtatc 119  Q
    |||||| ||||||||||||||| ||||||||||| |||||| |||||||| ||||| |||||||||| | ||  ||||||||||||||||||| ||||||    
T  39730111 aattgcatcaatctcatagtaatgtacaatcacacgatgacttgagtgtggcaaataccttgaccag-ctcactggctttaggaggtacatacatgtatc 39730209  T
Q  120 ttggaatt 127  Q
    ||| ||||    
T  39730210 ttgaaatt 39730217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 127
Target Start/End: Complemental strand, 22389265 - 22389140
Alignment:
Q  2 accttgaatgtctatttagaattgcttcaatctcatagtaaggtacaatcacatgatgactgagtgtgacaaatgccttgaccagccccatcggctttag 101  Q
    ||||||||||| | |||| |||| ||||||| |||||| |||||||| |||||||| ||||| ||||| ||||| |||||||||||| ||    ||||||    
T  22389265 accttgaatgtttgtttataattacttcaatttcatagcaaggtacagtcacatgacgactgggtgtggcaaataccttgaccagcctcactacctttag 22389166  T
Q  102 gaggtacatacgtgtatcttggaatt 127  Q
    ||||||||  | |||| |||||||||    
T  22389165 gaggtacaatcctgtagcttggaatt 22389140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 188
Target Start/End: Complemental strand, 17415588 - 17415496
Alignment:
Q  96 ctttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaa 188  Q
    ||||||||||||||||||||||||||||||||     | |||||||||||  ||||||| |||||||||||||  ||||| ||||| ||||||    
T  17415588 ctttaggaggtacatacgtgtatcttggaattgggaatagttgaaagtaagagtatcttttctaagtttgttccacttgcgtggaagtggtaa 17415496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 231
Target Start/End: Complemental strand, 28278823 - 28278704
Alignment:
Q  111 acgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtttgttcatcttgcatggaaatggtaatatagttacgtctgatggtggg 210  Q
    ||||||||||||||||| ||| ||||| |||||||  ||||||||||||| ||||||   ||||||||||| ||||||  |||| |  |||||| |||||    
T  28278823 acgtgtatcttggaattctatgtggttaaaagtaagagtatcttctctaactttgtttcgcttgcatggaagtggtaaactagtcaaatctgatagtggg 28278724  T
Q  211 atgagtgacaatctgagcaaa 231  Q
    | || ||||||| ||||||||    
T  28278723 a-gaatgacaatatgagcaaa 28278704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 255 - 313
Target Start/End: Complemental strand, 28278664 - 28278606
Alignment:
Q  255 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttg 313  Q
    |||||||||||||||||||||||| |||||||||||| |||  ||||||||| ||||||    
T  28278664 attctaacttcttgctattgtgttgcttgaggacaagcaacactttaagttttgggttg 28278606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 313
Target Start/End: Original strand, 31449830 - 31449888
Alignment:
Q  255 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttg 313  Q
    ||||| ||||||||||| | |||| |||||||||||| ||| |||||||||||||||||    
T  31449830 attctgacttcttgctaatttgttacttgaggacaagcaacagtttaagtttggggttg 31449888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 313
Target Start/End: Complemental strand, 22388997 - 22388940
Alignment:
Q  255 attctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttg 313  Q
    ||||||||||||||||||| | |||||||| |||||| |||| | ||||||||||||||    
T  22388997 attctaacttcttgctatttt-tttcttgatgacaagcaacgatataagtttggggttg 22388940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 313
Target Start/End: Original strand, 39730324 - 39730378
Alignment:
Q  259 taacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttg 313  Q
    ||||||||||||||| |||| |||||||||||  |||  ||||||||||||||||    
T  39730324 taacttcttgctattttgttgcttgaggacaaataacattttaagtttggggttg 39730378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0990 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0990
Description:

Target: scaffold0990; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 167
Target Start/End: Original strand, 3134 - 3237
Alignment:
Q  64 agtgtgacaaatgccttgaccagccccatcggctttaggaggtacatacgtgtatcttggaattttatctggttgaaagtaattgtatcttctctaagtt 163  Q
    ||||||||||||||||||||||  ||||   |  ||||||| |||||| |||||||||| |||| ||| |||||||||||||  ||||| | ||||||||    
T  3134 agtgtgacaaatgccttgaccaatcccactagtcttaggagatacatatgtgtatcttgaaattgtatgtggttgaaagtaagagtatcctttctaagtt 3233  T
Q  164 tgtt 167  Q
    ||||    
T  3234 tgtt 3237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1026 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold1026
Description:

Target: scaffold1026; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 2323 - 2186
Alignment:
Q  21 aattgcttcaatctcatagtaaggtacaatcacatgatgact-gagtgtgacaaatgccttgaccagccccatcggctttaggaggtacatacgtgtatc 119  Q
    |||| ||||||| |||||| || |||||||||||||| |||| ||||||| ||||| || | |||| |  ||  ||||||||||||||||||| ||| ||    
T  2323 aattacttcaatttcatagcaaagtacaatcacatgacgacttgagtgtggcaaataccgtaaccatctgcactggctttaggaggtacatacatgtgtc 2224  T
Q  120 ttggaattttatctggttgaaagtaattgtatcttctc 157  Q
    ||| | || ||  |||||||||||||  ||||||||||    
T  2223 ttgaatttgtacgtggttgaaagtaagagtatcttctc 2186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1026; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 313
Target Start/End: Complemental strand, 2071 - 2015
Alignment:
Q  257 tctaacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttg 313  Q
    ||||||||||||||||| | || ||||| |||||| |||| ||||||||||||||||    
T  2071 tctaacttcttgctatttttttgcttgatgacaagtaacgttttaagtttggggttg 2015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 313
Target Start/End: Complemental strand, 22783 - 22729
Alignment:
Q  259 taacttcttgctattgtgtttcttgaggacaagaaacggtttaagtttggggttg 313  Q
    |||||||||||||||||||| ||||||| |||| |||  ||||||||||||||||    
T  22783 taacttcttgctattgtgttgcttgagggcaagcaacactttaagtttggggttg 22729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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