View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8778_7 (Length: 309)

Name: NF8778_7
Description: NF8778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8778_7
NF8778_7
[»] chr4 (1 HSPs)
chr4 (23-309)||(51504031-51504317)


Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 23 - 309
Target Start/End: Complemental strand, 51504317 - 51504031
Alignment:
Q  23 cacagaaaagatattaacacttggacattgcaaagatcaaagatctgcaatgatgacagcaaaaacaatcatgtaggccatttagcacccccttattatt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  51504317 cacagaaaagatattaacacttggacattgcaaagatcaaagatctgcaatgatgacagcaaaaacaatcatgtaggccatttaacaccctcttattatt 51504218  T
Q  123 attggaaaaacattgtttttacctgactgtattctctcacatgtagatttttgggacttcttgatcaaacaggaatccctgcttcctgccaaagtgcttt 222  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  51504217 attggaaaatcattgtttttacctgactgtattctctcacatgtagatttttgggacttcttgatcaaacagaaatccctgcttcctgccaaagtgcttt 51504118  T
Q  223 tgatgttgcatgtttccgcatggaggagagactgtcctactccagcacagaaaaggtacattactatgacttactataactttttcc 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51504117 tgatgttgcatgtttccgcatggaggagagactgtcctactccagcacagaaaaggtacattactatgacttactataactttttcc 51504031  T

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