View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8778_high_1 (Length: 436)
Name: NF8778_high_1
Description: NF8778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8778_high_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 20322784 - 20322368
Alignment:
| Q |
1 |
tggtgattccttagaagaatttcaatatattaaatccattttggacacattgttcaaaatcaaagatttaggacaattaaaattcttccttggacttgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20322784 |
tggtgattccttagaagaatttcaatatattaaatccattttggacacattgttcaaaatcaaagatttaggacaattaaaattcttccttggacttgaa |
20322685 |
T |
|
| Q |
101 |
gttgctcattctcaacttggtatctctctttgtcagaagaaatattgcttggatttacttgcagattcaggtactattggttctaaacctgcatccactc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20322684 |
gttgctcattctcaacttggtatctctctttgtcagaagaaatattgcttggatttacttgcagattcaggtactattggttctaaacctgcatccactc |
20322585 |
T |
|
| Q |
201 |
cctctgatccttctctcaagttacataaggatggtgctttaccctatgaggacattccttcttatagaaggttgattggcagattattatatcttaacac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20322584 |
cctctgatccttctctcaagttacataaggatggtgctttaccctatgaggacattccttcttatagaaggttgattggcagattattatatcttaacac |
20322485 |
T |
|
| Q |
301 |
cactagaccagatatcacctatatcacacaacaattgagtcaatttctatctgctcccactcatactcatcattctgcagctttaagggtcttgagatat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20322484 |
cactagaccagatatcacctatatcacacaacaattgagtcaatttctatctgctcccactcatactcatcattctgcagctttaagggtcttgagatat |
20322385 |
T |
|
| Q |
401 |
ttgaagaattgtccagg |
417 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
20322384 |
ttgaagaattgtccagg |
20322368 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 152 - 405
Target Start/End: Complemental strand, 10560644 - 10560391
Alignment:
| Q |
152 |
gatttacttgcagattcaggtactattggttctaaacctgcatccactccctctgatccttctctcaagttacataaggatggtgctttaccctatgagg |
251 |
Q |
| |
|
||||| |||||| |||||||| | ||||||||||||||||||||| ||| ||||| || ||| |||||||||| ||||||||||| ||||||||||| | |
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|
| T |
10560644 |
gatttgcttgcatattcaggtgccattggttctaaacctgcatcctttccttctgacccctctatcaagttacacaaggatggtgccttaccctatgaag |
10560545 |
T |
|
| Q |
252 |
acattccttcttatagaaggttgattggcagattattatatcttaacaccactagaccagatatcacctatatcacacaacaattgagtcaatttctatc |
351 |
Q |
| |
|
||||| |||| ||||||||| ||||||| |||||| | || || || | ||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
10560544 |
acatttcttcctatagaaggctgattggtagattactctacctaaatatcaccagaccagacatcacctatatcacacaacaattgagtcaatttctatc |
10560445 |
T |
|
| Q |
352 |
tgctcccactcatactcatcattctgcagctttaagggtcttgagatatttgaa |
405 |
Q |
| |
|
|||||| ||||||||||||||| ||| || |||||||| |||||||||||||| |
|
|
| T |
10560444 |
tgctcctactcatactcatcatgttgctgccttaagggttttgagatatttgaa |
10560391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 348
Target Start/End: Complemental strand, 44666971 - 44666868
Alignment:
| Q |
245 |
tatgaggacattccttcttatagaaggttgattggcagattattatatcttaacaccactagaccagatatcacctatatcacacaacaattgagtcaat |
344 |
Q |
| |
|
||||| ||||| || ||||||||||| |||||| | ||| | | ||||| || |||||| |||||||||||||| |||||||||||||| || |||| |
|
|
| T |
44666971 |
tatgaagacatcccctcttatagaagattgattagaagactcatctatctcaattccactataccagatatcaccttcatcacacaacaattaagccaat |
44666872 |
T |
|
| Q |
345 |
ttct |
348 |
Q |
| |
|
|||| |
|
|
| T |
44666871 |
ttct |
44666868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 19585265 - 19585203
Alignment:
| Q |
152 |
gatttacttgcagattcaggtactattggttctaaacctgcatccactccctctgatccttct |
214 |
Q |
| |
|
|||||||||||||||||||| ||||| | ||| ||||||| || |||||||||||| ||||| |
|
|
| T |
19585265 |
gatttacttgcagattcaggcactatagattccaaacctgtttctactccctctgattcttct |
19585203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 144
Target Start/End: Complemental strand, 10560710 - 10560673
Alignment:
| Q |
107 |
cattctcaacttggtatctctctttgtcagaagaaata |
144 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
10560710 |
cattcccatcttggtatctctctttgtcagaagaaata |
10560673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 245 - 348
Target Start/End: Original strand, 3005116 - 3005219
Alignment:
| Q |
245 |
tatgaggacattccttcttatagaaggttgattggcagattattatatcttaacaccactagaccagatatcacctatatcacacaacaattgagtcaat |
344 |
Q |
| |
|
||||| || ||| |||||||||| || |||||||| ||| |||| ||||| ||||| || ||||| ||||| |||| ||| ||||||||||||||||||| |
|
|
| T |
3005116 |
tatgaagatatttcttcttataggagattgattggtagactattgtatctgaacacaacaagacctgatattacctttataacacaacaattgagtcaat |
3005215 |
T |
|
| Q |
345 |
ttct |
348 |
Q |
| |
|
|||| |
|
|
| T |
3005216 |
ttct |
3005219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 245 - 348
Target Start/End: Original strand, 23682433 - 23682536
Alignment:
| Q |
245 |
tatgaggacattccttcttatagaaggttgattggcagattattatatcttaacaccactagaccagatatcacctatatcacacaacaattgagtcaat |
344 |
Q |
| |
|
||||| || ||| |||||||||| || |||||||| ||| |||| ||||| ||||| || ||||| ||||| |||| ||| ||||||||||||||||||| |
|
|
| T |
23682433 |
tatgaagatatttcttcttataggagattgattggtagactattgtatctgaacacaacaagacctgatattacctttataacacaacaattgagtcaat |
23682532 |
T |
|
| Q |
345 |
ttct |
348 |
Q |
| |
|
|||| |
|
|
| T |
23682533 |
ttct |
23682536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 189
Target Start/End: Complemental strand, 19914804 - 19914707
Alignment:
| Q |
92 |
ggacttgaagttgctcattctcaacttggtatctctctttgtcagaagaaatattgcttggatttacttgcagattcaggtactattggttctaaacc |
189 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||| ||||||| || ||||| ||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
19914804 |
ggacttgaagttgctcattctcagagtggtatttctctatgtcagagaaagtattgtttggatttactgcaagattcaggtttccttggttctaaacc |
19914707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 28155106 - 28155047
Alignment:
| Q |
53 |
ttcaaaatcaaagatttaggacaattaaaattcttccttggacttgaagttgctcattct |
112 |
Q |
| |
|
||||||||||||||||| || || | |||| ||||||||| |||||||||||||||||| |
|
|
| T |
28155106 |
ttcaaaatcaaagatttgggccagctgaaatacttccttggccttgaagttgctcattct |
28155047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 219
Target Start/End: Original strand, 29501098 - 29501164
Alignment:
| Q |
153 |
atttacttgcagattcaggtactattggttctaaacctgcatccactccctctgatccttctctcaa |
219 |
Q |
| |
|
||||||||| ||||||| | ||||| || || ||||||| ||||||||||||||| |||||||||| |
|
|
| T |
29501098 |
atttacttgaagattcaagaactataggctccaaacctgtttccactccctctgattcttctctcaa |
29501164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 26971134 - 26971300
Alignment:
| Q |
20 |
tttcaatatattaaatccattttggacacattgttcaaaatcaaagatttaggacaattaaaattcttccttggacttgaagttgctcattctcaacttg |
119 |
Q |
| |
|
|||||| | |||||| | |||||||| || || ||||||||||| |||||||| || || ||||| || ||||| | ||| ||||| |||||| |||||| |
|
|
| T |
26971134 |
tttcaacacattaaaacaattttggatactttattcaaaatcaaggatttaggtcagttgaaattatttcttggtcatgaggttgcacattcttaacttg |
26971233 |
T |
|
| Q |
120 |
gtatctctctttgtcagaagaaatattgcttggatttacttgcagattcaggtactattggttctaa |
186 |
Q |
| |
|
| || |||||||| ||||| || |||||||| ||| | |||| ||||| ||| | ||||||||||| |
|
|
| T |
26971234 |
gcatttctctttgacagaaaaattattgcttagatctcattgctgattctggtgccattggttctaa |
26971300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 348
Target Start/End: Complemental strand, 37737498 - 37737203
Alignment:
| Q |
53 |
ttcaaaatcaaagatttaggacaattaaaattcttccttggacttgaagttgctcattctcaacttggtatctctctttgtcagaagaaa-tattgcttg |
151 |
Q |
| |
|
||||||||||||||| | || |||||||||| |||||||| | || |||||||||||| ||| || ||||| | ||||| |||||| ||||| || |
|
|
| T |
37737498 |
ttcaaaatcaaagatcttggccaattaaaatatttccttggtttagaggttgctcattctaaacaaggaatctcattgtgtca-aagaaagtattgtctg |
37737400 |
T |
|
| Q |
152 |
gatttacttgcagattcaggtactattggttctaaacctgcatccactccctctgatccttctctcaagttacataaggatggtgctttaccctatgagg |
251 |
Q |
| |
|
||||| ||||| ||||||||| | | ||||||||| | ||||||||| || ||||||||| |||| | ||||| ||| | || ||||| | |
|
|
| T |
37737399 |
gatttgcttgctgattcaggtcttgtcaattctaaaccagtatccactccttcagatccttctatcaaactgcataatgattccagtcctccttatgaag |
37737300 |
T |
|
| Q |
252 |
acattccttcttatagaaggttgattggcagattattatatcttaacaccactagaccagatatcacctatatcacacaacaattgagtcaatttct |
348 |
Q |
| |
|
| ||| |||||||||| || |||||||| ||| |||| ||||| ||||| || ||||| ||||| |||| ||| | ||||||||||||||||||||| |
|
|
| T |
37737299 |
atatttcttcttataggagattgattggtagactattgtatctgaacacaacaagacctgatattacctttataatacaacaattgagtcaatttct |
37737203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 32611172 - 32611085
Alignment:
| Q |
1 |
tggtgattccttagaagaatttcaatatattaaatccattttggacacattgttcaaaatcaaagatttaggacaattaaaattcttc |
88 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||| |||||||||||| |||||| |||| || ||||| || || ||||||||||| |
|
|
| T |
32611172 |
tggtgattctttagaagaatttcaatccattaaattcattttggacactttgttctaaattaaggatttgggtcagctaaaattcttc |
32611085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 52779350 - 52779468
Alignment:
| Q |
96 |
ttgaagttgctcattctcaacttggtatctctctttgtcagaagaaatattgcttggatttacttgcagattcaggtactattggttctaaacctgcatc |
195 |
Q |
| |
|
||||||||||||| || | ||||| || ||| | ||||||| ||||| ||| | |||||||||||||||||||| ||||| | ||| ||||||| || |
|
|
| T |
52779350 |
ttgaagttgctcactccaagcttggaatttctttatgtcagagaaaatactgccttgatttacttgcagattcaggcactatagattccaaacctgtttc |
52779449 |
T |
|
| Q |
196 |
cactccctctgatccttct |
214 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
52779450 |
tactccctctgattcttct |
52779468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 348
Target Start/End: Complemental strand, 9802291 - 9802201
Alignment:
| Q |
258 |
cttcttatagaaggttgattggcagattattatatcttaacaccactagaccagatatcacctatatcacacaacaattgagtcaatttct |
348 |
Q |
| |
|
|||| |||||||||||||||||||| ||| | ||||| || || || ||||| ||||| || | || || |||||||||||||||||||| |
|
|
| T |
9802291 |
cttcctatagaaggttgattggcaggttactttatctcaatacaacaagacctgatattactttcattactcaacaattgagtcaatttct |
9802201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 348
Target Start/End: Complemental strand, 23165898 - 23165815
Alignment:
| Q |
265 |
tagaaggttgattggcagattattatatcttaacaccactagaccagatatcacctatatcacacaacaattgagtcaatttct |
348 |
Q |
| |
|
|||||||||| ||||||| ||| |||||||||||| ||||||||| ||||| |||| ||||| |||||| |||| |||||||| |
|
|
| T |
23165898 |
tagaaggttggttggcaggttactatatcttaacaacactagacctgatattaccttcatcacccaacaactgagccaatttct |
23165815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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