View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8778_low_1 (Length: 436)

Name: NF8778_low_1
Description: NF8778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8778_low_1
NF8778_low_1
[»] chr5 (1 HSPs)
chr5 (1-417)||(20322368-20322784)
[»] chr3 (4 HSPs)
chr3 (152-405)||(10560391-10560644)
chr3 (245-348)||(44666868-44666971)
chr3 (152-214)||(19585203-19585265)
chr3 (107-144)||(10560673-10560710)
[»] chr7 (1 HSPs)
chr7 (245-348)||(3005116-3005219)
[»] chr2 (4 HSPs)
chr2 (245-348)||(23682433-23682536)
chr2 (92-189)||(19914707-19914804)
chr2 (53-112)||(28155047-28155106)
chr2 (153-219)||(29501098-29501164)
[»] chr6 (1 HSPs)
chr6 (20-186)||(26971134-26971300)
[»] chr1 (4 HSPs)
chr1 (53-348)||(37737203-37737498)
chr1 (1-88)||(32611085-32611172)
chr1 (96-214)||(52779350-52779468)
chr1 (258-348)||(9802201-9802291)
[»] chr4 (1 HSPs)
chr4 (265-348)||(23165815-23165898)


Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 20322784 - 20322368
Alignment:
Q  1 tggtgattccttagaagaatttcaatatattaaatccattttggacacattgttcaaaatcaaagatttaggacaattaaaattcttccttggacttgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20322784 tggtgattccttagaagaatttcaatatattaaatccattttggacacattgttcaaaatcaaagatttaggacaattaaaattcttccttggacttgaa 20322685  T
Q  101 gttgctcattctcaacttggtatctctctttgtcagaagaaatattgcttggatttacttgcagattcaggtactattggttctaaacctgcatccactc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20322684 gttgctcattctcaacttggtatctctctttgtcagaagaaatattgcttggatttacttgcagattcaggtactattggttctaaacctgcatccactc 20322585  T
Q  201 cctctgatccttctctcaagttacataaggatggtgctttaccctatgaggacattccttcttatagaaggttgattggcagattattatatcttaacac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20322584 cctctgatccttctctcaagttacataaggatggtgctttaccctatgaggacattccttcttatagaaggttgattggcagattattatatcttaacac 20322485  T
Q  301 cactagaccagatatcacctatatcacacaacaattgagtcaatttctatctgctcccactcatactcatcattctgcagctttaagggtcttgagatat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20322484 cactagaccagatatcacctatatcacacaacaattgagtcaatttctatctgctcccactcatactcatcattctgcagctttaagggtcttgagatat 20322385  T
Q  401 ttgaagaattgtccagg 417  Q
    |||||||||||||||||    
T  20322384 ttgaagaattgtccagg 20322368  T

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Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 152 - 405
Target Start/End: Complemental strand, 10560644 - 10560391
Alignment:
Q  152 gatttacttgcagattcaggtactattggttctaaacctgcatccactccctctgatccttctctcaagttacataaggatggtgctttaccctatgagg 251  Q
    ||||| |||||| |||||||| | |||||||||||||||||||||  ||| ||||| || ||| |||||||||| ||||||||||| ||||||||||| |    
T  10560644 gatttgcttgcatattcaggtgccattggttctaaacctgcatcctttccttctgacccctctatcaagttacacaaggatggtgccttaccctatgaag 10560545  T
Q  252 acattccttcttatagaaggttgattggcagattattatatcttaacaccactagaccagatatcacctatatcacacaacaattgagtcaatttctatc 351  Q
    ||||| |||| ||||||||| ||||||| |||||| | || || || | ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  10560544 acatttcttcctatagaaggctgattggtagattactctacctaaatatcaccagaccagacatcacctatatcacacaacaattgagtcaatttctatc 10560445  T
Q  352 tgctcccactcatactcatcattctgcagctttaagggtcttgagatatttgaa 405  Q
    |||||| |||||||||||||||  ||| || |||||||| ||||||||||||||    
T  10560444 tgctcctactcatactcatcatgttgctgccttaagggttttgagatatttgaa 10560391  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 348
Target Start/End: Complemental strand, 44666971 - 44666868
Alignment:
Q  245 tatgaggacattccttcttatagaaggttgattggcagattattatatcttaacaccactagaccagatatcacctatatcacacaacaattgagtcaat 344  Q
    ||||| ||||| || ||||||||||| |||||| | ||| |  | ||||| ||  |||||| ||||||||||||||  |||||||||||||| || ||||    
T  44666971 tatgaagacatcccctcttatagaagattgattagaagactcatctatctcaattccactataccagatatcaccttcatcacacaacaattaagccaat 44666872  T
Q  345 ttct 348  Q
    ||||    
T  44666871 ttct 44666868  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 19585265 - 19585203
Alignment:
Q  152 gatttacttgcagattcaggtactattggttctaaacctgcatccactccctctgatccttct 214  Q
    |||||||||||||||||||| ||||| | ||| |||||||  || |||||||||||| |||||    
T  19585265 gatttacttgcagattcaggcactatagattccaaacctgtttctactccctctgattcttct 19585203  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 144
Target Start/End: Complemental strand, 10560710 - 10560673
Alignment:
Q  107 cattctcaacttggtatctctctttgtcagaagaaata 144  Q
    ||||| || |||||||||||||||||||||||||||||    
T  10560710 cattcccatcttggtatctctctttgtcagaagaaata 10560673  T

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Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 245 - 348
Target Start/End: Original strand, 3005116 - 3005219
Alignment:
Q  245 tatgaggacattccttcttatagaaggttgattggcagattattatatcttaacaccactagaccagatatcacctatatcacacaacaattgagtcaat 344  Q
    ||||| || ||| |||||||||| || |||||||| ||| |||| ||||| ||||| || ||||| ||||| |||| ||| |||||||||||||||||||    
T  3005116 tatgaagatatttcttcttataggagattgattggtagactattgtatctgaacacaacaagacctgatattacctttataacacaacaattgagtcaat 3005215  T
Q  345 ttct 348  Q
    ||||    
T  3005216 ttct 3005219  T

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Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 245 - 348
Target Start/End: Original strand, 23682433 - 23682536
Alignment:
Q  245 tatgaggacattccttcttatagaaggttgattggcagattattatatcttaacaccactagaccagatatcacctatatcacacaacaattgagtcaat 344  Q
    ||||| || ||| |||||||||| || |||||||| ||| |||| ||||| ||||| || ||||| ||||| |||| ||| |||||||||||||||||||    
T  23682433 tatgaagatatttcttcttataggagattgattggtagactattgtatctgaacacaacaagacctgatattacctttataacacaacaattgagtcaat 23682532  T
Q  345 ttct 348  Q
    ||||    
T  23682533 ttct 23682536  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 189
Target Start/End: Complemental strand, 19914804 - 19914707
Alignment:
Q  92 ggacttgaagttgctcattctcaacttggtatctctctttgtcagaagaaatattgcttggatttacttgcagattcaggtactattggttctaaacc 189  Q
    |||||||||||||||||||||||   |||||| ||||| |||||||  || ||||| |||||||||||   ||||||||||    |||||||||||||    
T  19914804 ggacttgaagttgctcattctcagagtggtatttctctatgtcagagaaagtattgtttggatttactgcaagattcaggtttccttggttctaaacc 19914707  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 28155106 - 28155047
Alignment:
Q  53 ttcaaaatcaaagatttaggacaattaaaattcttccttggacttgaagttgctcattct 112  Q
    ||||||||||||||||| || ||  | |||| ||||||||| ||||||||||||||||||    
T  28155106 ttcaaaatcaaagatttgggccagctgaaatacttccttggccttgaagttgctcattct 28155047  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 219
Target Start/End: Original strand, 29501098 - 29501164
Alignment:
Q  153 atttacttgcagattcaggtactattggttctaaacctgcatccactccctctgatccttctctcaa 219  Q
    ||||||||| ||||||| | ||||| || || |||||||  ||||||||||||||| ||||||||||    
T  29501098 atttacttgaagattcaagaactataggctccaaacctgtttccactccctctgattcttctctcaa 29501164  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 26971134 - 26971300
Alignment:
Q  20 tttcaatatattaaatccattttggacacattgttcaaaatcaaagatttaggacaattaaaattcttccttggacttgaagttgctcattctcaacttg 119  Q
    |||||| | |||||| | |||||||| || || ||||||||||| |||||||| || || ||||| || ||||| | ||| ||||| |||||| ||||||    
T  26971134 tttcaacacattaaaacaattttggatactttattcaaaatcaaggatttaggtcagttgaaattatttcttggtcatgaggttgcacattcttaacttg 26971233  T
Q  120 gtatctctctttgtcagaagaaatattgcttggatttacttgcagattcaggtactattggttctaa 186  Q
    | || |||||||| ||||| || |||||||| ||| |  |||| ||||| ||| | |||||||||||    
T  26971234 gcatttctctttgacagaaaaattattgcttagatctcattgctgattctggtgccattggttctaa 26971300  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 348
Target Start/End: Complemental strand, 37737498 - 37737203
Alignment:
Q  53 ttcaaaatcaaagatttaggacaattaaaattcttccttggacttgaagttgctcattctcaacttggtatctctctttgtcagaagaaa-tattgcttg 151  Q
    ||||||||||||||| | || ||||||||||  ||||||||  | || |||||||||||| |||  || |||||  | ||||| |||||| |||||  ||    
T  37737498 ttcaaaatcaaagatcttggccaattaaaatatttccttggtttagaggttgctcattctaaacaaggaatctcattgtgtca-aagaaagtattgtctg 37737400  T
Q  152 gatttacttgcagattcaggtactattggttctaaacctgcatccactccctctgatccttctctcaagttacataaggatggtgctttaccctatgagg 251  Q
    ||||| ||||| |||||||||  | |   ||||||||| | ||||||||| || ||||||||| ||||  | ||||| |||     |   || ||||| |    
T  37737399 gatttgcttgctgattcaggtcttgtcaattctaaaccagtatccactccttcagatccttctatcaaactgcataatgattccagtcctccttatgaag 37737300  T
Q  252 acattccttcttatagaaggttgattggcagattattatatcttaacaccactagaccagatatcacctatatcacacaacaattgagtcaatttct 348  Q
    | ||| |||||||||| || |||||||| ||| |||| ||||| ||||| || ||||| ||||| |||| ||| | |||||||||||||||||||||    
T  37737299 atatttcttcttataggagattgattggtagactattgtatctgaacacaacaagacctgatattacctttataatacaacaattgagtcaatttct 37737203  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 32611172 - 32611085
Alignment:
Q  1 tggtgattccttagaagaatttcaatatattaaatccattttggacacattgttcaaaatcaaagatttaggacaattaaaattcttc 88  Q
    ||||||||| ||||||||||||||||  ||||||| |||||||||||| |||||| |||| || ||||| || ||  |||||||||||    
T  32611172 tggtgattctttagaagaatttcaatccattaaattcattttggacactttgttctaaattaaggatttgggtcagctaaaattcttc 32611085  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 52779350 - 52779468
Alignment:
Q  96 ttgaagttgctcattctcaacttggtatctctctttgtcagaagaaatattgcttggatttacttgcagattcaggtactattggttctaaacctgcatc 195  Q
    ||||||||||||| ||  | ||||| || ||| | |||||||  ||||| ||| | |||||||||||||||||||| ||||| | ||| |||||||  ||    
T  52779350 ttgaagttgctcactccaagcttggaatttctttatgtcagagaaaatactgccttgatttacttgcagattcaggcactatagattccaaacctgtttc 52779449  T
Q  196 cactccctctgatccttct 214  Q
     |||||||||||| |||||    
T  52779450 tactccctctgattcttct 52779468  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 348
Target Start/End: Complemental strand, 9802291 - 9802201
Alignment:
Q  258 cttcttatagaaggttgattggcagattattatatcttaacaccactagaccagatatcacctatatcacacaacaattgagtcaatttct 348  Q
    |||| |||||||||||||||||||| ||| | ||||| || || || ||||| ||||| || |  || || ||||||||||||||||||||    
T  9802291 cttcctatagaaggttgattggcaggttactttatctcaatacaacaagacctgatattactttcattactcaacaattgagtcaatttct 9802201  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 348
Target Start/End: Complemental strand, 23165898 - 23165815
Alignment:
Q  265 tagaaggttgattggcagattattatatcttaacaccactagaccagatatcacctatatcacacaacaattgagtcaatttct 348  Q
    |||||||||| ||||||| ||| |||||||||||| ||||||||| ||||| ||||  ||||| |||||| |||| ||||||||    
T  23165898 tagaaggttggttggcaggttactatatcttaacaacactagacctgatattaccttcatcacccaacaactgagccaatttct 23165815  T

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