View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8779_high_16 (Length: 222)
Name: NF8779_high_16
Description: NF8779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8779_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 27329266 - 27329460
Alignment:
| Q |
2 |
tgaatgattgtttgttgtaaatgttatccaatatgtccctaatttcattgttaaaatggtaagaaactccaagcctttgcaatacatcaataaactcaag |
101 |
Q |
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| T |
27329266 |
tgaatgtttgtttgttgtaaatgttatccaatatgtccctaatttcattgttaaaatggtaagacactccaagcctttgcaatacatcaataagctcaag |
27329365 |
T |
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| Q |
102 |
ttgaccaagctcattttccgttttcgtaaacatcattcttactttttcctttaaaattgtgcattgctttgtgtgcattacttcctgaattaagt |
196 |
Q |
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| T |
27329366 |
ttgagtaagctcattttccgttttgttaagcatcattcttactttttcctttagaattgagcattgctttctgtacattacttcctgaattaagt |
27329460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 27446788 - 27446961
Alignment:
| Q |
15 |
gttgtaaatgttatccaatatgtccctaatttcattgttaaaatggtaagaaactccaagcctttgcaatacatcaataaactcaagttgaccaagctca |
114 |
Q |
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| T |
27446788 |
gttgtaaatgttgtccaatattttccctatttcattgttaaattgataagccacaccaagcctttgcaatacatcaataaattcaagttgatcaatctca |
27446887 |
T |
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| Q |
115 |
ttttccgttttcgtaaacatcattcttactttttcctttaaaattgtgcattgctttgtgtgcattacttcctg |
188 |
Q |
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| T |
27446888 |
ttttccattttgttaaacatcattcttactttttcctttagcattaagaattcctttgtgtgctttacttcctg |
27446961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 18839695 - 18839585
Alignment:
| Q |
9 |
ttgtttgttgtaaatgttatccaatatgtccctaatttcattgttaaaatggtaagaaactccaagcctttgcaatacatcaataaactcaagttgacca |
108 |
Q |
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|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| || |
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| T |
18839695 |
ttgtttgttgtaaatgttgtccaatatatccctaatttcattgttaaaatggtaagacactccaatcctttgcaatacatcaataaactcaagttgatca |
18839596 |
T |
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| Q |
109 |
agctcattttc |
119 |
Q |
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| T |
18839595 |
agctcgttttc |
18839585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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