View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8779_high_17 (Length: 221)
Name: NF8779_high_17
Description: NF8779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8779_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 56219544 - 56219732
Alignment:
| Q |
16 |
agaccaacaacaagctctctaataacggtgttaagtccaggacagagaccaccgcatgttacaatagcagctcttacatcagaagggttgaagaagacgt |
115 |
Q |
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| T |
56219544 |
agaccaacaacaagctctctaataacggtgttaagtccaggacagagaccaccgcatgttacaatagcagctcttacatcagaagggttgaagaagacgt |
56219643 |
T |
|
| Q |
116 |
tgttgcgaggaccagcggtgcgataagcgaagcgtgtggagtgagagaaaacgaggttgttaagagtgatgtagaagtgttggagttgg |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
56219644 |
tgttgcgaggaccagcggtgcgataagcgaagcgtgtggagtgagagaaaacgaggttgttattagtgatgtagaagtgttggagttgg |
56219732 |
T |
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