View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8779_low_1 (Length: 631)

Name: NF8779_low_1
Description: NF8779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8779_low_1
NF8779_low_1
[»] chr1 (11 HSPs)
chr1 (43-626)||(13867537-13868120)
chr1 (43-418)||(45795267-45795642)
chr1 (207-626)||(26510243-26510662)
chr1 (48-271)||(34352613-34352854)
chr1 (184-267)||(3544964-3545047)
chr1 (519-626)||(33150830-33150937)
chr1 (184-278)||(1248448-1248542)
chr1 (48-87)||(5808973-5809012)
chr1 (177-268)||(52691665-52691756)
chr1 (382-443)||(5808740-5808801)
chr1 (367-415)||(50730085-50730133)
[»] chr4 (4 HSPs)
chr4 (43-626)||(43516452-43517035)
chr4 (183-626)||(20543920-20544362)
chr4 (178-216)||(54483016-54483054)
chr4 (388-424)||(38295784-38295820)
[»] chr3 (8 HSPs)
chr3 (43-615)||(40513428-40514000)
chr3 (177-626)||(34829254-34829703)
chr3 (184-267)||(31675124-31675207)
chr3 (184-267)||(31921213-31921296)
chr3 (167-216)||(18368801-18368850)
chr3 (48-124)||(34829774-34829850)
chr3 (357-428)||(31921386-31921457)
chr3 (366-439)||(33121362-33121435)
[»] chr7 (5 HSPs)
chr7 (363-626)||(35213468-35213731)
chr7 (183-626)||(26855548-26855991)
chr7 (372-443)||(44433425-44433496)
chr7 (369-439)||(4077297-4077367)
chr7 (192-268)||(8753259-8753335)
[»] chr2 (8 HSPs)
chr2 (146-626)||(11196186-11196666)
chr2 (364-598)||(32624217-32624451)
chr2 (543-598)||(144246-144301)
chr2 (55-150)||(11196680-11196775)
chr2 (167-216)||(35488082-35488131)
chr2 (167-216)||(8066072-8066121)
chr2 (226-262)||(7300874-7300910)
chr2 (188-268)||(18844500-18844580)
[»] chr8 (7 HSPs)
chr8 (177-443)||(9510800-9511066)
chr8 (177-443)||(6245145-6245411)
chr8 (357-428)||(3939248-3939319)
chr8 (190-268)||(25193282-25193360)
chr8 (363-440)||(15439189-15439266)
chr8 (363-440)||(15530493-15530570)
chr8 (570-626)||(25900869-25900925)
[»] chr6 (8 HSPs)
chr6 (357-598)||(14687044-14687285)
chr6 (184-267)||(14844000-14844083)
chr6 (183-277)||(14686870-14686964)
chr6 (43-151)||(14686712-14686820)
chr6 (369-441)||(26513744-26513816)
chr6 (167-218)||(23065893-23065944)
chr6 (177-268)||(25350416-25350507)
chr6 (167-218)||(9565610-9565661)
[»] chr5 (4 HSPs)
chr5 (363-626)||(21367960-21368223)
chr5 (184-267)||(476407-476490)
chr5 (584-626)||(979350-979392)
chr5 (366-439)||(4415745-4415818)
[»] scaffold0555 (1 HSPs)
scaffold0555 (184-267)||(7862-7945)
[»] scaffold0043 (1 HSPs)
scaffold0043 (184-267)||(34472-34555)


Alignment Details
Target: chr1 (Bit Score: 488; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 43 - 626
Target Start/End: Original strand, 13867537 - 13868120
Alignment:
Q  43 cttagttttggtatgacaggtggctgagtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctga 142  Q
    |||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13867537 cttacttttggtatgacaggtggcttggtgatgttcctttttgtatcaggttccgtcgtctttttaatttagtgtctaataagttgagcacggtagctga 13867636  T
Q  143 tatggttgatggagaggcgtcgaattggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttg 242  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  13867637 tatggttgttggagaggcgtggaattggcggcgtaggttaagggtgtgggaggaggatatgctagaggagtgtaggcttttaattaatggtgtcgttttg 13867736  T
Q  243 cagtctgatatttctgacaggtggcaatgagactccgattctgattgcggttacacggtgagaggtgtctatcaacaactgacagctcaggttcaacctc 342  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| || || |||||||||||| |||||||||||||||||||    
T  13867737 cagtctgatatttctgacaggtggcaatgggactccgattctgattacggttacacggtgatagatgcctatcaacaacttacagctcaggttcaacctc 13867836  T
Q  343 tagatgcttccattggagaccttatctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaa 442  Q
     ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13867837 cagatgcttccattggcgaccttatctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaa 13867936  T
Q  443 tcaccttctccggcgtggcatcatcattggcgaggcagcattgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgct 542  Q
    |||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  13867937 tcaccttctccggcgtggtatcattgttggcgaggcagcattgtgtgttactgggtgtggcatggcagagtctgtttctcatttatttctacattgtgct 13868036  T
Q  543 acttttggtactttgtggcattttgtcaggtgttggattggaatgtcaggtgctgatccccttaatattgatgtccatctcatt 626  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  13868037 acttttggtactttatggcattttgtcaggtgttggattggaatgtcaggtgctgatccccttaatattgatgaccatttcatt 13868120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 43 - 418
Target Start/End: Complemental strand, 45795642 - 45795267
Alignment:
Q  43 cttagttttggtatgacaggtggctgagtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctga 142  Q
    |||| ||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45795642 cttacttttggtatgacaggtggctaggtgatgttcctttttgtatcagtttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctga 45795543  T
Q  143 tatggttgatggagaggcgtcgaattggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttg 242  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  45795542 tatggttgatggagaggcgtggaattggcggcgtaggttaagggtgtgggaggaggatatgctagaggagtgtaggcttttaattaatggtgtcgttttg 45795443  T
Q  243 cagtctgatatttctgacaggtggcaatgagactccgattctgattgcggttacacggtgagaggtgtctatcaacaactgacagctcaggttcaacctc 342  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45795442 cagtctgatatttctgacaggtggcaatgggactccgattctgattgtggttacacggtgagaggtgtctatcaacaactgacagctcaggttcaacctc 45795343  T
Q  343 tagatgcttccattggagaccttatctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgtt 418  Q
     |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  45795342 cagatgcttccattggagaccttatttggcataatcaggtgccgcttaaggtttccatttttgcttggggattgtt 45795267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 207 - 626
Target Start/End: Original strand, 26510243 - 26510662
Alignment:
Q  207 gaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggcaatgagactccgattctgattgcggttacacggtgagag 306  Q
    |||||||||| ||  ||| || ||||||| |||||||||| |||| ||||||||||||||||||| ||||| |||| || | | |||||||| |||||||    
T  26510243 gaggagtgtaggcaattacttgatggtgttgttttgcagtatgatctttctgacaggtggcaatgggactctgattttgctggtggttacactgtgagag 26510342  T
Q  307 gtgtctatcaacaactgacagctcaggttcaacctctagatgcttccattggagaccttatctggcataatcaggtgccgcttaaggtttccatttttgc 406  Q
    || ||||| ||||||||||| |||||  | | |||| ||||| | | || ||||| |||||||||||||| || |||||||| ||||| ||||| |||||    
T  26510343 gtttctataaacaactgacaactcagactgatcctccagatggtactatgggagatcttatctggcataagcaagtgccgctgaaggtctccatctttgc 26510442  T
Q  407 ttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagcattgtgtgttactgggtgtggcatg 506  Q
    |||  | ||||| ||||| |||||||||||||||||| | ||| |  | |||||  | |||| |  ||| ||||   |||||||||| || || |||| |    
T  26510443 ttgacggttgttgcgggacaggttgccgactaagaataatcttatgagacgtggagtaatcaataccgaagcagttatgtgtgttacaggatgcggcaag 26510542  T
Q  507 gctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatgtcaggtgctgatcccctta 606  Q
    |  |||||||   |||| || ||||| |||||||| | ||| ||||| |||||||||  | |||||| |||||| ||||||||||||| ||| ||| |||    
T  26510543 gaagagtctgcgcctcacttgtttattcattgtgccattttcggtacattgtggcatcatatcaggtcttggatcggaatgtcaggtgttgaccccttta 26510642  T
Q  607 atattgatgtccatctcatt 626  Q
    |||| |||| |||| |||||    
T  26510643 atatcgatgaccatttcatt 26510662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 48 - 271
Target Start/End: Complemental strand, 34352854 - 34352613
Alignment:
Q  48 ttttggtatgacaggtggctgagtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctgatatgg 147  Q
    ||||| ||||||||||||||  ||||||||||||||||||||||||| ||||| |||||| | |||| |||||||||| ||||||| |||||| ||||||    
T  34352854 ttttgatatgacaggtggcttggtgatgttcctttttgtatcaggttgcgtcgcctatttgacttagcgtctaataagctgagcacagtagctaatatgg 34352755  T
Q  148 ttg------------------atggagaggcgtcgaattggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaa 229  Q
    |||                  | |||||||||| |   ||| |||||||||| |||||||||||||||||  ||||||||||||||| ||  |||| |||    
T  34352754 ttgcccttggtggggaggttgacggagaggcgtggggctggaggcgtaggttgagggtgtgggaggaggagatgctagaggagtgtaggcaattaactaa 34352655  T
Q  230 tggtgtcgttttgcagtctgatatttctgacaggtggcaatg 271  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  34352654 tggtgtcgttttgcagtctgatatttatgacaggtggcaatg 34352613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 184 - 267
Target Start/End: Original strand, 3544964 - 3545047
Alignment:
Q  184 gggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggc 267  Q
    |||||||||||||||| ||| |||| ||||||| ||  ||| |||||||||| |||||||||||||||||||||||||||||||    
T  3544964 gggtgtgggaggaggagttggtagaagagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgacaggtggc 3545047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 519 - 626
Target Start/End: Complemental strand, 33150937 - 33150830
Alignment:
Q  519 tctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatgtcaggtgctgatccccttaatattgatgtcc 618  Q
    |||||||||||||| || || || ||||||||  | ||||||||| || |||||| |||||| |||||||||||||| || |||||||||||||||| ||    
T  33150937 tctcatttatttattcactgcgccacttttggctcattgtggcatcttatcaggtcttggatcggaatgtcaggtgccgacccccttaatattgatgacc 33150838  T
Q  619 atctcatt 626  Q
    || |||||    
T  33150837 atttcatt 33150830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 184 - 278
Target Start/End: Original strand, 1248448 - 1248542
Alignment:
Q  184 gggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggcaatgagactcc 278  Q
    |||| |||||||||||  || |||||||||||| ||  ||| |||||||||| |||||||| | ||||||||||||||||||||| || ||||||    
T  1248448 gggtatgggaggaggagctgttagaggagtgtaggcaattacttaatggtgttgttttgcaatttgatatttctgacaggtggcactgggactcc 1248542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 5809012 - 5808973
Alignment:
Q  48 ttttggtatgacaggtggctgagtgatgttcctttttgta 87  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  5809012 ttttggtatgacaggtggcttggtgatgttcctttttgta 5808973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 268
Target Start/End: Complemental strand, 52691756 - 52691665
Alignment:
Q  177 aggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggca 268  Q
    |||||| ||| |||||||||||| ||| | |||||||||| || | |  |||||| | | ||||||||| |||| |||||||||||||||||    
T  52691756 aggttatgggcgtgggaggaggagttggtggaggagtgtaggcatcttcttaatgattttgttttgcagactgacatttctgacaggtggca 52691665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 443
Target Start/End: Complemental strand, 5808801 - 5808740
Alignment:
Q  382 tgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaat 443  Q
    ||||||| |||||||| || ||||||||| | ||||| || || ||||||||||||||||||    
T  5808801 tgccgctaaaggtttctatctttgcttggcggttgttgcgagacaggttgccgactaagaat 5808740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 367 - 415
Target Start/End: Complemental strand, 50730133 - 50730085
Alignment:
Q  367 tctggcataatcaggtgccgcttaaggtttccatttttgcttggagatt 415  Q
    ||||||| || ||||| ||||| ||||| ||||||||||||||||||||    
T  50730133 tctggcacaaacaggtaccgctgaaggtgtccatttttgcttggagatt 50730085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 460; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 43 - 626
Target Start/End: Original strand, 43516452 - 43517035
Alignment:
Q  43 cttagttttggtatgacaggtggctgagtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctga 142  Q
    |||| ||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43516452 cttacttttggtatgacaagtggcttggtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctga 43516551  T
Q  143 tatggttgatggagaggcgtcgaattggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttg 242  Q
    |||||||||||||||||||| || ||||||||||||||| |||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||    
T  43516552 tatggttgatggagaggcgtggagttggcggcgtaggttgagggtgtgggaggaggatatgctagaggagtgtaggcatttaattaatggtgtcgttttg 43516651  T
Q  243 cagtctgatatttctgacaggtggcaatgagactccgattctgattgcggttacacggtgagaggtgtctatcaacaactgacagctcaggttcaacctc 342  Q
    ||||||||||||||||| ||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43516652 cagtctgatatttctgagaggtggcaatgggactttgattctgattgcggttacacggtgagaggtgtctatcaacaaccgacagctcaggttcaacctc 43516751  T
Q  343 tagatgcttccattggagaccttatctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaa 442  Q
     ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  43516752 cagatgctaccattggagatcttatctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttatgggataggttgccgactaagaa 43516851  T
Q  443 tcaccttctccggcgtggcatcatcattggcgaggcagcattgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgct 542  Q
    ||| || |||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||| |  ||||||||||||||||||||||||||||||||    
T  43516852 tcatctcctccggcgtggcatcatcgttggcgaggtagcattgtgtgttactgggtgcggcatgacatagtctgtttctcatttatttatacattgtgct 43516951  T
Q  543 acttttggtactttgtggcattttgtcaggtgttggattggaatgtcaggtgctgatccccttaatattgatgtccatctcatt 626  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  43516952 actttcggtactttgtggcattttatcaggtgttggattggaatgtcaggtgctgatccccttaatattgatgaccatttcatt 43517035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 183 - 626
Target Start/End: Complemental strand, 20544362 - 20543920
Alignment:
Q  183 agggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggcaatgagactccgatt 282  Q
    |||| ||||||||||||  || |||||||||||| | |||||||||||||||||| |||||||  | ||||| |||||||||| ||||| ||||| ||||    
T  20544362 agggcgtgggaggaggagatgttagaggagtgtaggtttttaattaatggtgtcg-tttgcagcataatattactgacaggtgacaatgggactctgatt 20544264  T
Q  283 ctgattgcggttacacggtgagaggtgtctatcaacaactgacagctcaggttcaacctctagatgcttccatt-ggagaccttatctggcataatcagg 381  Q
    ||| | | ||||| |  ||| |||| |||||||| || || ||| ||||||   |||||| ||| | |||| || ||||| ||||| |||||||| ||||    
T  20544263 ctgttggtggttatagtgtgggaggcgtctatcatcatcttacaactcaggcggaacctccagacg-ttcctttgggagatcttatatggcataagcagg 20544165  T
Q  382 tgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagc 481  Q
    ||||||| ||||||||||||||| ||||| |||| || || |||||||||||||||||||| || |||||  |||||||||| ||||  |||||| ||      
T  20544164 tgccgctgaaggtttccatttttacttggcgattattgcgagataggttgccgactaagaaccatcttctaaggcgtggcataatcaacggcgagacaag 20544065  T
Q  482 attgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggatt 581  Q
      ||||||| || ||||| || ||||  ||| ||   |||||||||||||| || || || ||||||||| | ||||||||| || |||||| ||||||     
T  20544064 tatgtgtgtcacagggtgcggtatggaagagactacatctcatttatttattcactgcgccacttttggttcattgtggcatcttatcaggtcttggatc 20543965  T
Q  582 ggaatgtcaggtgctgatccccttaatattgatgtccatctcatt 626  Q
    ||||||||||||||||| ||| |||||||||||| |||| |||||    
T  20543964 ggaatgtcaggtgctgacccctttaatattgatgaccatttcatt 20543920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 54483016 - 54483054
Alignment:
Q  178 ggttaagggtgtgggaggaggatttgctagaggagtgta 216  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  54483016 ggttatgggtgtgggaggaggatttggtagaggagtgta 54483054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 388 - 424
Target Start/End: Complemental strand, 38295820 - 38295784
Alignment:
Q  388 ttaaggtttccatttttgcttggagattgttacggga 424  Q
    |||| |||||||||||||||||||| |||||||||||    
T  38295820 ttaaagtttccatttttgcttggaggttgttacggga 38295784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 43 - 615
Target Start/End: Original strand, 40513428 - 40514000
Alignment:
Q  43 cttagttttggtatgacaggtggctgagtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctga 142  Q
    |||| |||||||||||||| |||||| ||||||||||||| ||||||||||||||||| || ||||||||||||||| |||||||||||||| |||||||    
T  40513428 cttacttttggtatgacagatggctgggtgatgttcctttctgtatcaggttccgtcgactttttaatttagtgtctgataagttgagcacgatagctga 40513527  T
Q  143 tatggttgatggagaggcgtcgaattggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttg 242  Q
    |||||||| |||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||    
T  40513528 tatggttgctggagaggggtggaattggcggcgtaggttaagggtgtgggaggaggatatgctagaggagtgtaggctgttaattaatggtgtcgttttg 40513627  T
Q  243 cagtctgatatttctgacaggtggcaatgagactccgattctgattgcggttacacggtgagaggtgtctatcaacaactgacagctcaggttcaacctc 342  Q
    |||| |||||||||||||||||||||||| ||||||||| | |||| ||||||||||||||| | || |||||||||||| |||| ||||||||||||||    
T  40513628 cagtatgatatttctgacaggtggcaatgggactccgatacggattacggttacacggtgagcgatgcctatcaacaacttacagttcaggttcaacctc 40513727  T
Q  343 tagatgcttccattggagaccttatctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaa 442  Q
     ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40513728 cagatgcttccattggcgaccttatctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaa 40513827  T
Q  443 tcaccttctccggcgtggcatcatcattggcgaggcagcattgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgct 542  Q
    ||||||||| |||||||| |||||| | || |||||||||||||||||| | |||||||||||||| |||||||| |||||||||||| |||||||| ||    
T  40513828 tcaccttcttcggcgtggtatcatcgtcggtgaggcagcattgtgtgtttccgggtgtggcatggcagagtctgtctctcatttatttctacattgtcct 40513927  T
Q  543 acttttggtactttgtggcattttgtcaggtgttggattggaatgtcaggtgctgatccccttaatattgatg 615  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40513928 acttttggtactttatggcattttgtcaggtgttggattggaatgtcatgtgctgatccccttaatattgatg 40514000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 177 - 626
Target Start/End: Complemental strand, 34829703 - 34829254
Alignment:
Q  177 aggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggcaatgagact 276  Q
    ||||| ||| |||||||||||||  ||||||||||||||| |   ||| |||||||||| ||||||||||||||| ||||||||||||||||||| ||||    
T  34829703 aggttgaggctgtgggaggaggagatgctagaggagtgtaggaaattacttaatggtgttgttttgcagtctgatctttctgacaggtggcaatgggact 34829604  T
Q  277 ccgattctgattgcggttacacggtgagaggtgtctatcaacaactgacagctcaggttcaacctctagatgcttccattggagaccttatctggcataa 376  Q
    | |||| |||| | |||||||| ||||||||||||||||||||||||| | |||||| | | |||| | ||| | | || ||||| ||||||||||||||    
T  34829603 ctgattttgatggtggttacactgtgagaggtgtctatcaacaactgaaaactcaggctgatcctccatatggtactatgggagatcttatctggcataa 34829504  T
Q  377 tcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgag 476  Q
     ||||||| ||| ||||| ||||| ||||||||| | ||||| ||||| |||||| ||| ||||||| | |||||  | |||||  | |||| || |||     
T  34829503 gcaggtgctgctgaaggtctccatctttgcttggcggttgttgcgggacaggttgtcgattaagaataatcttctaagacgtggagtaatcaatgccgaa 34829404  T
Q  477 gcagcattgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgtt 576  Q
    | ||   |||||||||| ||||| |||| ||  |||||||   |||| || ||||| |||||||| |||||  |||| |||||||||  | |||||| ||    
T  34829403 gtagttatgtgtgttacagggtgcggcaaggaagagtctgcgcctcacttgtttattcattgtgccactttcagtacattgtggcatcatatcaggtctt 34829304  T
Q  577 ggattggaatgtcaggtgctgatccccttaatattgatgtccatctcatt 626  Q
    |||| ||||||||||||| | | ||| |||||||||||| |||| |||||    
T  34829303 ggatcggaatgtcaggtgttaacccctttaatattgatgaccatttcatt 34829254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 184 - 267
Target Start/End: Complemental strand, 31675207 - 31675124
Alignment:
Q  184 gggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggc 267  Q
    |||||||||||||||| ||| |||||||||||| |   ||| |||||||||| |||||||||||||||||||||||||||||||    
T  31675207 gggtgtgggaggaggagttggtagaggagtgtaggaaattacttaatggtgtggttttgcagtctgatatttctgacaggtggc 31675124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 184 - 267
Target Start/End: Original strand, 31921213 - 31921296
Alignment:
Q  184 gggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggc 267  Q
    |||||||||||||||| ||| |||||||||||| |   ||| |||||||||| |||||||||||||||||||||||||||||||    
T  31921213 gggtgtgggaggaggagttggtagaggagtgtaggaaattacttaatggtgtggttttgcagtctgatatttctgacaggtggc 31921296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 18368801 - 18368850
Alignment:
Q  167 ttggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgta 216  Q
    |||||||||||||||  ||||||||||||||| |||||||||||||||||    
T  18368801 ttggcggcgtaggttgtgggtgtgggaggaggctttgctagaggagtgta 18368850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 124
Target Start/End: Complemental strand, 34829850 - 34829774
Alignment:
Q  48 ttttggtatgacaggtggctgagtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataa 124  Q
    ||||||||||||||||||||  ||||||| ||||||||||  ||||| |||||  ||||| || |||||||||||||    
T  34829850 ttttggtatgacaggtggcttggtgatgtccctttttgtactaggtttcgtcggttatttgatctagtgtctaataa 34829774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 428
Target Start/End: Original strand, 31921386 - 31921457
Alignment:
Q  357 ggagaccttatctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggatagg 428  Q
    ||||||||| |||||||||| ||||| ||  | |||||||||||| | |||||||| ||| |||||||||||    
T  31921386 ggagaccttgtctggcataagcaggttcctttgaaggtttccattatggcttggagtttgctacgggatagg 31921457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 439
Target Start/End: Original strand, 33121362 - 33121435
Alignment:
Q  366 atctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaa 439  Q
    |||||||||| |||||||||| | ||||||||| | ||||||||||| ||| | || ||||| ||||| |||||    
T  33121362 atctggcatagtcaggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagattgcctactaa 33121435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 363 - 626
Target Start/End: Complemental strand, 35213731 - 35213468
Alignment:
Q  363 cttatctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggca 462  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35213731 cttatctggcataatcaagtgccgcttaaggtttccatttttgcttgaagattgttacgggataggttgccgactaagaatcaccttctccggcatggca 35213632  T
Q  463 tcatcattggcgaggcagcattgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggca 562  Q
    ||||  ||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| | ||||||||||||    
T  35213631 tcattgttggcgaggcagcattgtgtgttactgggtgcggcatggcagagtctgtttcccatttatttatacattgtgctactttcgttactttgtggca 35213532  T
Q  563 ttttgtcaggtgttggattggaatgtcaggtgctgatccccttaatattgatgtccatctcatt 626  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||    
T  35213531 ttttgtcaggtgttggattggaatgtcaggtgttgatccccttaatattgatgaccatttcatt 35213468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 183 - 626
Target Start/End: Complemental strand, 26855991 - 26855548
Alignment:
Q  183 agggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggcaatgagactccgatt 282  Q
    |||| ||||||||||||  || |||||||||||| ||||||||||||||||||| ||||||||  | |||| || |||||||||||||| ||||| ||||    
T  26855991 agggcgtgggaggaggagctgttagaggagtgtaggcttttaattaatggtgtcattttgcagcataatatctccgacaggtggcaatgggactcggatt 26855892  T
Q  283 ctgattgcggttacacggtgagaggtgtctatcaacaactgacagctcaggttcaacctctagatgcttccattgg-agaccttatctggcataatcagg 381  Q
     || | ||||||| |  ||| |||| | |||||| || || ||| |||| | | |||||| ||| | |||| |||| ||||||||| |||||||| ||||    
T  26855891 atggtggcggttatagtgtgggaggcgcctatcatcatcttacaactcaagctgaacctccagacg-ttcctttgggagaccttatatggcataagcagg 26855793  T
Q  382 tgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagc 481  Q
    ||||||| ||||||||||||||||||||| |||| || || ||||||||||||||||||||||| ||| |  |||||||||| ||||   |||||||       
T  26855792 tgccgctcaaggtttccatttttgcttggcgattattgcgtgataggttgccgactaagaatcatctttttaggcgtggcataatcaacagcgaggcttg 26855693  T
Q  482 attgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggatt 581  Q
      ||||||| || ||||| || ||||  ||| ||   |||||| | ||||| |||||  | ||||||||| ||||||||||| || |||||| || |||     
T  26855692 tatgtgtgtcacagggtgcggtatggaagagactacatctcatctttttattcattgcaccacttttggttctttgtggcatcttatcaggtctttgatc 26855593  T
Q  582 ggaatgtcaggtgctgatccccttaatattgatgtccatctcatt 626  Q
    ||||||||||||||||| ||  |||||||| ||| |||| |||||    
T  26855592 ggaatgtcaggtgctgacccttttaatattaatgaccatttcatt 26855548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 443
Target Start/End: Complemental strand, 44433496 - 44433425
Alignment:
Q  372 cataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaat 443  Q
    ||||||||||| ||||| ||||| || |||||||||||||||||||| || || ||||| || || ||||||    
T  44433496 cataatcaggtaccgctgaaggtgtctatttttgcttggagattgttgcgtgacaggttaccaaccaagaat 44433425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 369 - 439
Target Start/End: Complemental strand, 4077367 - 4077297
Alignment:
Q  369 tggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaa 439  Q
    |||||||| ||||||||| | |||||||| |||||||||||||| ||| | || ||||| ||||| |||||    
T  4077367 tggcataaccaggtgccgttgaaggtttctatttttgcttggaggttgcttcgtgatagattgcctactaa 4077297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 192 - 268
Target Start/End: Original strand, 8753259 - 8753335
Alignment:
Q  192 gaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggca 268  Q
    ||||||||  || ||| |||||||| ||| ||| || | ||| | |||||||| |||||||||||||||||||||||    
T  8753259 gaggaggacatggtagtggagtgtaggctcttacttgacggttttgttttgcattctgatatttctgacaggtggca 8753335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 169; Significance: 3e-90; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 146 - 626
Target Start/End: Complemental strand, 11196666 - 11196186
Alignment:
Q  146 ggttgatggagaggcgtcgaattggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcag 245  Q
    |||||| |||||||||| |  |||| |||| | ||| |||||||||||||||||  ||||||||||||||| ||  ||||||||||||||||||||||||    
T  11196666 ggttgacggagaggcgtggggttggaggcgaatgttgagggtgtgggaggaggagatgctagaggagtgtaggcaattaattaatggtgtcgttttgcag 11196567  T
Q  246 tctgatatttctgacaggtggcaatgagactccgattctgattgcggttacacggtgagaggtgtctatcaacaactgacagctcaggttcaacctctag 345  Q
      | |||||||||||||||||||||| ||||| ||||||| | | |||||||  ||| |||| |||||||| || || ||  |||||| | |||||| ||    
T  11196566 cataatatttctgacaggtggcaatgggactctgattctgctggtggttacagtgtgggaggcgtctatcatcaccttactactcaggctgaacctccag 11196467  T
Q  346 atgcttccattggagaccttatctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatca 445  Q
    ||| | | || ||||| |||||||||||||| ||||||||||| ||||||||||||||| ||||| ||||||| || |||||||||||||||||||| ||    
T  11196466 atgttactataggagatcttatctggcataagcaggtgccgctgaaggtttccatttttacttggcgattgttgcgagataggttgccgactaagaacca 11196367  T
Q  446 ccttctccggcgtggcatcatcattggcgaggcagcattgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctact 545  Q
     |||||  |||||||||| |||| |||||||||||   |||||||||| ||||| || ||||| |||  ||  |||||||||||||| || || || |||    
T  11196366 tcttctaaggcgtggcataatcaatggcgaggcagttatgtgtgttacagggtgcggtatggcagagattgcgtctcatttatttattcactgcgccact 11196267  T
Q  546 tttggtactttgtggcattttgtcaggtgttggattggaatgtcaggtgctgatccccttaatattgatgtccatctcatt 626  Q
    |||||| | ||||||||| || |||||| ||||||  ||||||||||||  || | |||||||||||||| |||| |||||    
T  11196266 tttggttcattgtggcatcttatcaggtcttggatcagaatgtcaggtgtcgacctccttaatattgatgaccatttcatt 11196186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 364 - 598
Target Start/End: Complemental strand, 32624451 - 32624217
Alignment:
Q  364 ttatctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcat 463  Q
    |||| |||||||| ||||||||||| |||||||||||||||| |||| |||| ||  | |||||||||||||||||||| || |||||  ||||||||||    
T  32624451 ttatatggcataagcaggtgccgctgaaggtttccatttttgtttggcgattattgagagataggttgccgactaagaaccatcttctaaggcgtggcat 32624352  T
Q  464 catcattggcgaggcagcattgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcat 563  Q
     ||||  |||||||||    ||||||| || || || || ||||  ||| ||   |||||||||||||| ||||| || ||||||||| | |||||||||    
T  32624351 aatcaacggcgaggcatgtatgtgtgtcacaggatgcggtatggaagagactacatctcatttatttattcattgcgccacttttggttcattgtggcat 32624252  T
Q  564 tttgtcaggtgttggattggaatgtcaggtgctga 598  Q
     || |||||| ||||||||||||||||||||||||    
T  32624251 cttatcaggtcttggattggaatgtcaggtgctga 32624217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 543 - 598
Target Start/End: Original strand, 144246 - 144301
Alignment:
Q  543 acttttggtactttgtggcattttgtcaggtgttggattggaatgtcaggtgctga 598  Q
    ||||||||| ||||||||||| || |||||| |||||| |||||||||||||||||    
T  144246 acttttggttctttgtggcatcttatcaggtcttggatcggaatgtcaggtgctga 144301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 55 - 150
Target Start/End: Complemental strand, 11196775 - 11196680
Alignment:
Q  55 atgacaggtggctgagtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctgatatggttg 150  Q
    |||| ||||||||  |||||  ||||||||||| |||||||||| || ||||| | |||| |||||||||  |||| ||||| |||||||||||||    
T  11196775 atgataggtggcttggtgatactcctttttgtaccaggttccgttgtttatttgacttagcgtctaataaactgagtacggtggctgatatggttg 11196680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 35488131 - 35488082
Alignment:
Q  167 ttggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgta 216  Q
    |||||||||||||||  ||| ||||||||||| |||||||||||||||||    
T  35488131 ttggcggcgtaggttgtgggcgtgggaggaggctttgctagaggagtgta 35488082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 8066072 - 8066121
Alignment:
Q  167 ttggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgta 216  Q
    |||||||||||||||  ||| ||||||||||| | |||||||||||||||    
T  8066072 ttggcggcgtaggttgtgggcgtgggaggaggctatgctagaggagtgta 8066121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 226 - 262
Target Start/End: Complemental strand, 7300910 - 7300874
Alignment:
Q  226 ttaatggtgtcgttttgcagtctgatatttctgacag 262  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  7300910 ttaatggtgttgttttgcagtctgatgtttctgacag 7300874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 188 - 268
Target Start/End: Original strand, 18844500 - 18844580
Alignment:
Q  188 gtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggca 268  Q
    |||||||||||| ||| | |||||||||| || | |  |||||| | | |||||| ||||||| |||||||||||||||||    
T  18844500 gtgggaggaggagttggtggaggagtgtaggcatcttcttaatgattttgttttgtagtctgacatttctgacaggtggca 18844580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 177 - 443
Target Start/End: Complemental strand, 9511066 - 9510800
Alignment:
Q  177 aggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggcaatgagact 276  Q
    ||||| |||||||||||||||||  || |||||||||||| ||  ||  |||||||||| ||||||||| || |||||| |||||| ||||  || ||||    
T  9511066 aggttgagggtgtgggaggaggagatgttagaggagtgtaggcaattgcttaatggtgttgttttgcagcctaatatttttgacagatggctttgggact 9510967  T
Q  277 ccgattctgattgcggttacacggtgagaggtgtctatcaacaactgacagctcaggttcaacctctagatgcttccattggagaccttatctggcataa 376  Q
    | | ||||||| | |||||||| ||||||||||||||| ||||||||||| | || | | | |||| ||||| | | |  ||||| ||||||||||||||    
T  9510966 ctgtttctgatggtggttacactgtgagaggtgtctatgaacaactgacaacgcaagctgatcctcaagatgttactacgggagatcttatctggcataa 9510867  T
Q  377 tcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaat 443  Q
     ||||||||| | |||||||| || ||||||||  | ||||| || || |||||| |||||||||||    
T  9510866 gcaggtgccgttaaaggtttctatctttgcttgacggttgttgcgagacaggttgtcgactaagaat 9510800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 177 - 443
Target Start/End: Complemental strand, 6245411 - 6245145
Alignment:
Q  177 aggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggcaatgagact 276  Q
    ||||| |||||||||||||||||  || |||| ||||||| |   ||| |||||||||| ||||||| | ||||||||||||||| |||||  || || |    
T  6245411 aggttgagggtgtgggaggaggagatgttagatgagtgtaggtaattacttaatggtgttgttttgccgcctgatatttctgacaagtggctttgggatt 6245312  T
Q  277 ccgattctgattgcggttacacggtgagaggtgtctatcaacaactgacagctcaggttcaacctctagatgcttccattggagaccttatctggcataa 376  Q
    | | ||||||| | |||||||| ||||||||||||||| |||||||||||   |||| |   |||| ||||| | | |  ||||| ||||| ||||||||    
T  6245311 ctgtttctgatggtggttacactgtgagaggtgtctatgaacaactgacaatgcaggctgttcctcaagatgttactacgggagatcttatttggcataa 6245212  T
Q  377 tcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaat 443  Q
     |||||||| || |||||||| || ||||||||| ||||| | || |||||||||| ||||||||||    
T  6245211 gcaggtgccactaaaggtttctatctttgcttggcgattgatgcgagataggttgctgactaagaat 6245145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 428
Target Start/End: Complemental strand, 3939319 - 3939248
Alignment:
Q  357 ggagaccttatctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggatagg 428  Q
    ||||||||| |||||||||| ||||| ||  | |||||||||||| ||||||||   |||||||||||||||    
T  3939319 ggagaccttgtctggcataagcaggttcctttgaaggtttccattcttgcttggcatttgttacgggatagg 3939248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 190 - 268
Target Start/End: Complemental strand, 25193360 - 25193282
Alignment:
Q  190 gggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggca 268  Q
    |||||||||| ||| | |||||||||| || | |  |||||| | | |||||||||||||| |||||||||||||||||    
T  25193360 gggaggaggagttggtggaggagtgtaggcatcttcttaatgattttgttttgcagtctgacatttctgacaggtggca 25193282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 440
Target Start/End: Complemental strand, 15439266 - 15439189
Alignment:
Q  363 cttatctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaag 440  Q
    ||||| |||||||| ||||| ||  | ||||| ||||||||||||||| ||||||| ||||| ||| |||| ||||||    
T  15439266 cttatgtggcataaacaggtacccatgaaggtctccatttttgcttggcgattgttgcgggacaggctgccaactaag 15439189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 440
Target Start/End: Complemental strand, 15530570 - 15530493
Alignment:
Q  363 cttatctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaag 440  Q
    ||||| |||||||| ||||| ||  | ||||| ||||||||||||||| ||||||| ||||| ||| |||| ||||||    
T  15530570 cttatgtggcataaacaggtacccatgaaggtctccatttttgcttggcgattgttgcgggacaggctgccaactaag 15530493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 570 - 626
Target Start/End: Complemental strand, 25900925 - 25900869
Alignment:
Q  570 aggtgttggattggaatgtcaggtgctgatccccttaatattgatgtccatctcatt 626  Q
    |||| |||||| ||||||||||||| ||| ||| |||||||||||| |||| |||||    
T  25900925 aggtcttggatcggaatgtcaggtgttgacccctttaatattgatgaccatttcatt 25900869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 3e-31; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 357 - 598
Target Start/End: Original strand, 14687044 - 14687285
Alignment:
Q  357 ggagaccttatctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggc 456  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||| || || ||||||||||||||||||||||| ||| |  |||    
T  14687044 ggagaccttatatggcataagcaggtgccgcttaaggtttccatttttgcttggcgattattgcgtgataggttgccgactaagaatcatctttttaggc 14687143  T
Q  457 gtggcatcatcattggcgaggcagcattgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtacttt 556  Q
    ||||||| ||||   | ||||      ||||||| || ||||| ||  |||  ||| ||   |||||| | ||||| |||||  | ||||||||| ||||    
T  14687144 gtggcataatcaacagtgaggtttgtatgtgtgtcacagggtgcggtgtggaagagactacatctcatctttttattcattgcaccacttttggttcttt 14687243  T
Q  557 gtggcattttgtcaggtgttggattggaatgtcaggtgctga 598  Q
    ||||||| || |||||| |||||| |||||||||||||||||    
T  14687244 gtggcatcttatcaggtcttggatcggaatgtcaggtgctga 14687285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 184 - 267
Target Start/End: Original strand, 14844000 - 14844083
Alignment:
Q  184 gggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggc 267  Q
    |||||||||||||||| ||| |||| ||||||| ||  ||| |||||||||| |||||||||||||||||||||||||||||||    
T  14844000 gggtgtgggaggaggagttggtagaagagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgacaggtggc 14844083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 183 - 277
Target Start/End: Original strand, 14686870 - 14686964
Alignment:
Q  183 agggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggcaatgagactc 277  Q
    |||| ||||||||| ||  || |||||||||||| | ||||||||||||||||| ||||||||  | |||| ||||||||||||||||| |||||    
T  14686870 agggcgtgggaggatgagctgttagaggagtgtagggttttaattaatggtgtcattttgcagcataatatctctgacaggtggcaatgggactc 14686964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 43 - 151
Target Start/End: Original strand, 14686712 - 14686820
Alignment:
Q  43 cttagttttggtatgacaggtggctgagtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctga 142  Q
    |||| ||||||||||||||||||||  |||||   ||||||||||  || ||||||||| | ||| ||||||  |||||||| |||||||| || |||||    
T  14686712 cttacttttggtatgacaggtggcttggtgatacacctttttgtactagattccgtcgtttgtttgatttagcatctaataaattgagcactgtggctga 14686811  T
Q  143 tatggttga 151  Q
    |||||||||    
T  14686812 tatggttga 14686820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 441
Target Start/End: Complemental strand, 26513816 - 26513744
Alignment:
Q  369 tggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaaga 441  Q
    |||||||| ||||| || || |||||||||||||||||||||   ||||| ||||||||||||||||| ||||    
T  26513816 tggcataagcaggttcctctaaaggtttccatttttgcttggcagttgttgcgggataggttgccgaccaaga 26513744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 167 - 218
Target Start/End: Original strand, 23065893 - 23065944
Alignment:
Q  167 ttggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaag 218  Q
    |||||||||| ||||  ||| |||||||||||||||||||||||||||||||    
T  23065893 ttggcggcgtcggttgtgggcgtgggaggaggatttgctagaggagtgtaag 23065944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 177 - 268
Target Start/End: Complemental strand, 25350507 - 25350416
Alignment:
Q  177 aggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggca 268  Q
    |||||| ||| |||||||||||| ||| | |||||||||| |||| |  |||||| | | ||||||||| |||| |||||||||||||||||    
T  25350507 aggttatgggcgtgggaggaggagttggtggaggagtgtaggcttcttcttaatgattttgttttgcagactgacatttctgacaggtggca 25350416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 9565661 - 9565610
Alignment:
Q  167 ttggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaag 218  Q
    |||| ||||||||||  ||| ||||||||||| |||||||||||||||||||    
T  9565661 ttggaggcgtaggttgtgggcgtgggaggaggctttgctagaggagtgtaag 9565610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 363 - 626
Target Start/End: Original strand, 21367960 - 21368223
Alignment:
Q  363 cttatctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggca 462  Q
    ||||| ||||||||  |||||||||| ||||||||||||||| ||||| |||| ||  | |||||||||||||||||||| || || ||  |||||||||    
T  21367960 cttatatggcataagtaggtgccgctgaaggtttccattttttcttggcgattattgagagataggttgccgactaagaaccatctcctaaggcgtggca 21368059  T
Q  463 tcatcattggcgaggca-gcattgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggc 561  Q
    | ||||  ||||||||| | | | ||||| || ||||| || ||||  ||| ||   ||| || | ||||| ||||| || ||||||||| | |||||||    
T  21368060 taatcaacggcgaggcatgtaat-tgtgtcacagggtgcggtatggaagagactacatcttatctttttattcattgcgccacttttggttcattgtggc 21368158  T
Q  562 attttgtcaggtgttggattggaatgtcaggtgctgatccccttaatattgatgtccatctcatt 626  Q
    || || |||||| |||||| ||||||||||||||||| || ||||||||||||| |||| |||||    
T  21368159 atcttatcaggtcttggatcggaatgtcaggtgctgaccctcttaatattgatgaccatttcatt 21368223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 184 - 267
Target Start/End: Complemental strand, 476490 - 476407
Alignment:
Q  184 gggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggc 267  Q
    |||||||||||||||| ||| |||||||||||| ||  ||| |||||||||| |||||||||||||||||||||||||||||||    
T  476490 gggtgtgggaggaggagttggtagaggagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgacaggtggc 476407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 626
Target Start/End: Original strand, 979350 - 979392
Alignment:
Q  584 aatgtcaggtgctgatccccttaatattgatgtccatctcatt 626  Q
    ||||||||||| |||||||||||||||||||| |||| |||||    
T  979350 aatgtcaggtggtgatccccttaatattgatgaccatttcatt 979392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 439
Target Start/End: Original strand, 4415745 - 4415818
Alignment:
Q  366 atctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaa 439  Q
    ||||||||||||||||||||| | ||||||||  | ||||||||||| ||| | || ||||| ||||| |||||    
T  4415745 atctggcataatcaggtgccgttgaaggtttctttatttgcttggaggttgcttcgtgatagattgcctactaa 4415818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 184 - 267
Target Start/End: Complemental strand, 7945 - 7862
Alignment:
Q  184 gggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggc 267  Q
    |||||||||||||||| ||| |||||||||||| ||  ||| |||||| ||| |||||||||||||||||||||||||||||||    
T  7945 gggtgtgggaggaggagttggtagaggagtgtaggcaattacttaatgttgttgttttgcagtctgatatttctgacaggtggc 7862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 184 - 267
Target Start/End: Original strand, 34472 - 34555
Alignment:
Q  184 gggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggc 267  Q
    |||||||||||||||| ||| |||||||||||| ||  ||| |||||||||| ||||| |||||||||||||||||||||||||    
T  34472 gggtgtgggaggaggagttggtagaggagtgtaggcaattacttaatggtgttgttttacagtctgatatttctgacaggtggc 34555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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