View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8779_low_10 (Length: 324)
Name: NF8779_low_10
Description: NF8779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8779_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 311
Target Start/End: Original strand, 10625124 - 10625425
Alignment:
| Q |
16 |
atagggaccaatttgcaaattttgaaaaaactataaggacc----aatttgatagattgaaagtaaatcaatgatataaatacatatttttctagaagtg |
111 |
Q |
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| T |
10625124 |
atagggaccaatttgcaaattttgaaaaaactataaggaccgaccaatttgatagattgaaagtaaatcaatgatataaatacatatttttctagaagtg |
10625223 |
T |
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| Q |
112 |
attctatagtaattgatgttcattttattttaagattgaagattaaaatgaactaactcattaattagcatgcgtgtgagtggtatgatgacatatacca |
211 |
Q |
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| T |
10625224 |
atactatagtaattgatgttcattttattttaagattgaagattaaaatgaactaactaattaattagcatgcgtgtgagtggtatgatgacatatacca |
10625323 |
T |
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| Q |
212 |
atgatattaattaaatattgtagagtcacttagaactacccatgctcttggaagtgggatccgtgaaggacacaac--atatatatagctagggaagtat |
309 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
10625324 |
atgatattaattaaatgttgtagagtcacttagaactacccatgctcttggaagtgggatccgtgaaggacacaacatatatatatagctagggaagtat |
10625423 |
T |
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| Q |
310 |
at |
311 |
Q |
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|| |
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| T |
10625424 |
at |
10625425 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 29231665 - 29231713
Alignment:
| Q |
15 |
tatagggaccaatttgcaaattttgaaaaaactataaggaccaatttga |
63 |
Q |
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||||||||||||||| ||| ||||||| |||| ||||||||||||||| |
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| T |
29231665 |
tatagggaccaatttataaaatttgaaataactttaaggaccaatttga |
29231713 |
T |
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