View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8779_low_15 (Length: 276)
Name: NF8779_low_15
Description: NF8779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8779_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 25813410 - 25813165
Alignment:
| Q |
18 |
ctaggaccctcagaacccaaggaactgtttcctcttgccaatggtcttatgaggtctgtaattgatgttcactactacaacatcttcgatgattcgtttg |
117 |
Q |
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| T |
25813410 |
ctaggaccctcagaacccaaggaactctttcctcttgccaatggtcttatgaggtctgtaattgatgttcactactacaacatctttgatgattcgtttg |
25813311 |
T |
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| Q |
118 |
aaaacatgtctgctcaacagaacattgattttatttacaacaatcgttcatcggagttgaattttattacaacatcgaatggtcctcttactttcgtcgg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25813310 |
aaaacatgtctgctcaacagaacattgattttatttacaacaatcgttcatcggagttgaattttattacaacatcgaatggtcctcttactttcgtcgg |
25813211 |
T |
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| Q |
218 |
taagtcttaaaaaatttcagtataattgtccataaaaatgtagttt |
263 |
Q |
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| T |
25813210 |
taagtcttaaaaaatttcagtataattgtccataaaaatgtagttt |
25813165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 22 - 251
Target Start/End: Complemental strand, 25788487 - 25788258
Alignment:
| Q |
22 |
gaccctcagaacccaaggaactgtttcctcttgccaatggtcttatgaggtctgtaattgatgttcactactacaacatcttcgatgattcgtttgaaaa |
121 |
Q |
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| T |
25788487 |
gaccctcagaacccaaggaactctttcctcttgccaatggtcttatgaggtctgtaattgatgttcactactacaacattttcgatgattcgtttgaaaa |
25788388 |
T |
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| Q |
122 |
catgtctgctcaacagaacattgattttatttacaacaatcgttcatcggagttgaattttattacaacatcgaatggtcctcttactttcgtcggtaag |
221 |
Q |
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| T |
25788387 |
catgtctgctcaacagaacattgattttatttacaataatcgttcatcggagttgaattttattacaacatcgaatggtcctcttactttcttcggtaaa |
25788288 |
T |
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| Q |
222 |
tcttaaaaaatttcagtataattgtccata |
251 |
Q |
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| T |
25788287 |
tcttaaatattttcattataattctccata |
25788258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 25759269 - 25759502
Alignment:
| Q |
18 |
ctaggaccctcagaacccaaggaactgtttcctcttgccaatggtcttatgaggtctgtaattgatgttcactactacaacatcttcgatgattcgtttg |
117 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
25759269 |
ctaggaccctcagaacccaaggaactctttcctcttgccaatggtcttatgaggtctgtaattgatgttcactactacaacatcttcaatgatttgtttg |
25759368 |
T |
|
| Q |
118 |
aaaacatgtctgctcaacagaacattgattttatttacaacaatcgttcatcggagttgaattttattacaacatcgaatggtcctcttactttcgtcgg |
217 |
Q |
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| T |
25759369 |
aaaacatgattgctcaacaaaacattgtttttatttacaacaatcgttcatcggagttgaattttattacaacatcgaatggtcctcttactttcgtcgg |
25759468 |
T |
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| Q |
218 |
taagtcttaaaaaatttcagtataattgtccata |
251 |
Q |
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||||||||||| | ||||| ||||||| |||||| |
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| T |
25759469 |
taagtcttaaatattttcattataattctccata |
25759502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 218
Target Start/End: Complemental strand, 25862864 - 25862694
Alignment:
| Q |
48 |
cctcttgccaatggtcttatgaggtctgtaattgatgttcactactacaacatcttcgatgattcgtttgaaaacatgtctgctcaacagaacattgatt |
147 |
Q |
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|||||||| ||||| |||||| | || || |||||||| |||||||||| |||||| | ||| |||| ||||||| || |||||| || ||||||| |
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| T |
25862864 |
cctcttgctaatggccttatgggatcagtgattgatgtccactactacagcatctttggagatgagtttacaaacatgagtgttcaacaaaatattgatt |
25862765 |
T |
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| Q |
148 |
ttatttacaacaatcgttcatcggagttgaattttattacaacatcgaatggtcctcttactttcgtcggt |
218 |
Q |
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||||||||| ||||| |||||||| ||||||||| ||||||| || ||||||||||||| ||| |||||| |
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| T |
25862764 |
atatttacaataatcgatcatcggatttgaattttgttacaacctcaaatggtcctcttatttttgtcggt |
25862694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 12405473 - 12405228
Alignment:
| Q |
18 |
ctaggaccctcagaacccaaggaactgtttcctcttgccaatggtcttatgaggtctgtaattgatgttcactactacaacatcttcgatgattcgtttg |
117 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
12405473 |
ctaggaccctcagaacccaaggaactctttcctcttgccaatggtcttatgaggtctgtaattgatgttcactactacaacatctttgatgattcgtttg |
12405374 |
T |
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| Q |
118 |
aaaacatgtctgctcaacagaacattgattttatttacaacaatcgttcatcggagttgaattttattacaacatcgaatggtcctcttactttcgtcgg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12405373 |
aaaacatgtctgctcaacagaacattgattttatttacaacaatcgttcatcggagttgaattttattacaacatcgaatggtcctcttactttcgtcgg |
12405274 |
T |
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| Q |
218 |
taagtcttaaaaaatttcagtataattgtccataaaaatgtagttt |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12405273 |
taagtcttaaaaaatttcagtataattgtccataaaaatgtagttt |
12405228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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