View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8779_low_2 (Length: 552)
Name: NF8779_low_2
Description: NF8779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8779_low_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 21 - 552
Target Start/End: Complemental strand, 4286773 - 4286246
Alignment:
| Q |
21 |
actggggagtagttaccaagtgctagtttattgcatgtagtcaaatttatgattttttgatgtttcgaattgacgtagaattcagtttgtttggatcaac |
120 |
Q |
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| T |
4286773 |
actggggagtagttgccaagtgctagtttattgcatgtagtcaaatttatgatttttttatgtttcaaattgacgtagaattcagtttgtttggatcaac |
4286674 |
T |
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| Q |
121 |
tccttctcaagtgctttggggtggactgatgaattaattgtatgtcatgatcaaacaggtggtcataaataaatgttgctgtttattaaaccagttttat |
220 |
Q |
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| T |
4286673 |
tccttctcaagtgctttggggtggactgatgaatt----gtatgtcatgatcaaacaggtggtcataaataaatgttgctgtttattaaaccagttttat |
4286578 |
T |
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| Q |
221 |
gttttgagaccttttatatagcaatgcatgaacattgttcttgtgacacaccaagtaggcaagtagatttcttagataatatcagtcttatgtccttggt |
320 |
Q |
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| T |
4286577 |
gttttgagaccttttatatagcaatgcatgaacattgttcttgtgacacaccaagtaggcaagtagatttcttagataatatcagtcttatgtctttggt |
4286478 |
T |
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| Q |
321 |
tcaatcttcaatataataacttggtggtgagtgattgtaacttatgtatttgcttgcagatgagacctctatcgaacttgtagaacatggtactgttatg |
420 |
Q |
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| T |
4286477 |
tcaatcttcaatataataacttggtggtgagtgattgtaacttatgtatttgcttgcagatgagacctctatcgaactagtagaacatggtactgttatg |
4286378 |
T |
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| Q |
421 |
cccagtgaaaattgaacagacctctacttttatgtgannnnnnnnngctaaggttatgccatgatgggccaagggaatgataacagagtcttgtcttaaa |
520 |
Q |
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| T |
4286377 |
cccggtgaaaattgaacagacctctacgtttatgtgattcttttttgctaaggttatgccatgatgggccaagggaatgataacagagtcttgtcttaaa |
4286278 |
T |
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| Q |
521 |
tgaagagttagcttacttaattatcctcaagt |
552 |
Q |
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| T |
4286277 |
tgaagagttagcttacttaattatcctcaagt |
4286246 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 17165498 - 17165434
Alignment:
| Q |
245 |
tgcatgaacattgttcttgtgacacaccaagtaggcaagtagatttcttagataatatcagtctt |
309 |
Q |
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| T |
17165498 |
tgcatgaacattgttcttgtaacacactaattagttaagtagatttccttgataatgtcaatctt |
17165434 |
T |
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