View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8779_low_20 (Length: 253)
Name: NF8779_low_20
Description: NF8779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8779_low_20 |
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| [»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 10625052 - 10624817
Alignment:
| Q |
1 |
taagatatttttattatgtttgagcagattggaacgcatgaaaattaaggaaataggatgccaagccaaagtgattggcacagtggtgagtcttggaggt |
100 |
Q |
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| T |
10625052 |
taagatatttttatcatgtttgagcagattggaacgtatgaaaattaaggaaataggatgccaagccaaagtgattggcacagtggtgagtcttggaggt |
10624953 |
T |
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| Q |
101 |
gcatttctaatggcactatacaaaggtccagttcttcaaattgctggatcttcagcagctacccagatgcaccaacctgaaaatgtgaacgatcccagtg |
200 |
Q |
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| T |
10624952 |
gcatttctaatggcactatacaaaggtccagttcttcaaattgctggatcttcagcagctacccagatgcaccaacctgaaaatgtgaacgatcccagtg |
10624853 |
T |
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| Q |
201 |
gttcacactggctccttggtgcattattccttctca |
236 |
Q |
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| T |
10624852 |
gttcacactggctccttggtgcattattccttctca |
10624817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 8 - 219
Target Start/End: Original strand, 21094742 - 21094953
Alignment:
| Q |
8 |
tttttattatgtttgagcagattggaacgcatgaaaattaaggaaataggatgccaagccaaagtgattggcacagtggtgagtcttggaggtgcatttc |
107 |
Q |
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| T |
21094742 |
tttttatcatgtttgagcagattggaaggtatgaaaattaaggagatagcatgtcaaggcaaagtgattgggacaatggtgagtcttggtggtgctctac |
21094841 |
T |
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| Q |
108 |
taatggcactatacaaaggtccagttcttcaaattgctggatcttcagcagctacccagatgcaccaacctgaaaatgtgaacgatcccagtggttcaca |
207 |
Q |
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| T |
21094842 |
taatggtactatacaaaggtcctgttcttcaaaatgttgggtcatcaacagctactcagatgcaccaacctgaaaatgtgaacgatcccactggtgcaca |
21094941 |
T |
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| Q |
208 |
ctggctccttgg |
219 |
Q |
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| T |
21094942 |
ctggctccttgg |
21094953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 46239 - 46031
Alignment:
| Q |
8 |
tttttattatgtttgagcagattggaacgcatgaaaattaaggaaataggatgccaagccaaagtgattggcacagtggtgagtcttggaggtgcatttc |
107 |
Q |
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||||||| ||||||||||||||||||| | |||||||||||||| |||| ||| |||| |||||||||||||||| ||||||||||||| ||||| | | |
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| T |
46239 |
tttttatcatgtttgagcagattggaaggtatgaaaattaaggagatagcatgtcaaggcaaagtgattggcacaatggtgagtcttggtggtgctctac |
46140 |
T |
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| Q |
108 |
taatggcactatacaaaggtccagttcttcaaattgctggatcttcagcagctacccagatgcaccaacctgaaaatgtgaacgatcccagtggttcaca |
207 |
Q |
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| T |
46139 |
taatggtactatacaaaggtcctgttct---------tgggtcatcagcagctactcagatgcatcaacctgaaaatgtgaacgatcccactggtgcaca |
46049 |
T |
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| Q |
208 |
ctggctccttggtgcatt |
225 |
Q |
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|||||||||||| ||||| |
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| T |
46048 |
ctggctccttggagcatt |
46031 |
T |
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