View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8779_low_22 (Length: 243)
Name: NF8779_low_22
Description: NF8779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8779_low_22 |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 386489 - 386247
Alignment:
| Q |
1 |
accttccaaacacatcaagctcgatttatctgtcccataagaactaggtaattgagaagaacattgacaaagtactttgcagcaccttcctccaattcat |
100 |
Q |
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| T |
386489 |
accttccaaacacatcgagctcgatttatctgtcccataagaactaggtaattgagaagaacattgacaaagtactttgcagcaccttcctccaattcat |
386390 |
T |
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| Q |
101 |
aatcaatactttgaaagaattcccttacaaaagtcaacaccggttgtcccctctgttcggggactgtgaaaagtccacacataaacgagtgggccttatg |
200 |
Q |
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| T |
386389 |
aatcaatacttcgaaagaattcccttacaaaagtcaacaccggttgtcccctctgttcggggcctgtgaaaagtccacacataaacgagtgggccttatg |
386290 |
T |
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| Q |
201 |
ctttgttgcactaaggatagacatcaaatgcctctcattctct |
243 |
Q |
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| T |
386289 |
ctttgttgcactaaggatagacatcaaatgcctctcattctct |
386247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 38729053 - 38729295
Alignment:
| Q |
1 |
accttccaaacacatcaagctcgatttatctgtcccataagaactaggtaattgagaagaacattgacaaagtactttgcagcaccttcctccaattcat |
100 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38729053 |
accttccaaacacaccgagctcgatttatctgtcccataagaactagataattgagaagaacattgacaaagtactttgcagcaccttcctccaattcat |
38729152 |
T |
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| Q |
101 |
aatcaatactttgaaagaattcccttacaaaagtcaacaccggttgtcccctctgttcggggactgtgaaaagtccacacataaacgagtgggccttatg |
200 |
Q |
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| T |
38729153 |
aatcaatactttgaaagaattctcttacaaatgtcaacaccggctgtcccctctgttcggggcctgtgaatagtccacacataaacgagtgcgccttatg |
38729252 |
T |
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| Q |
201 |
ctttgttgcactaaggatagacatcaaatgcctctcattctct |
243 |
Q |
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| T |
38729253 |
ctttgttgcactaaggatagacatcaaatgcctctcattctct |
38729295 |
T |
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