View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8779_low_6 (Length: 375)
Name: NF8779_low_6
Description: NF8779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8779_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 29 - 365
Target Start/End: Complemental strand, 1696472 - 1696136
Alignment:
| Q |
29 |
tttcagcgtgttttctgtttcgcattctttgtgcagnnnnnnntggtgaaccaatcagcaatccgtaccgttgttggtatcataggtttgttaatcactt |
128 |
Q |
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| T |
1696472 |
tttcagtgtgttttctgtttcgcattctttgtgcagaaaaaaatggtgaaccaatcagcaattcgtaccgttgttggtatcataggtttgttaatcactt |
1696373 |
T |
|
| Q |
129 |
cttcttctcttttcagtatcatttcagtttattttaactttttctcataatcgattatcatgcatgcatgcataaagtataattttaactttttctgata |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1696372 |
cttcttctcttttcagtatcatttcagtttattttaactttttatcataatcgattatcatgcatgcatgcataaagtataattttaactttttctgata |
1696273 |
T |
|
| Q |
229 |
atcgattttagaagtctttagttcagttacgattgattttagctttttatgttaatcgattaatcatacatgtttctgattgatttttgtgaaatttgaa |
328 |
Q |
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||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1696272 |
atcgattttggaagtttttagttcagttacgattgattttagctttttatgttaatcgattaatcatacatgtttctgattgatttttgtgaaatttgaa |
1696173 |
T |
|
| Q |
329 |
tgcagggaatgttatctcgtttggactgttcttctca |
365 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
1696172 |
tgcagggaatgttatctcgtttggactgttcttctca |
1696136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 92 - 362
Target Start/End: Complemental strand, 1685852 - 1685590
Alignment:
| Q |
92 |
cgtaccgttgttggtatcataggtttgttaatcacttcttcttctcttttcagtatcatttcagtttattttaactttttctcataatcgattatcatgc |
191 |
Q |
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| T |
1685852 |
cgtaccattgttggtatcataggtttgttaatcacttcttcttctcttttcagt-----------ttattttaactttttatcataatcgattatcatgc |
1685764 |
T |
|
| Q |
192 |
atgcatgcataaagtataattttaactttttctgataatcgattttagaagtctttagttcagttacgattgattttagctttttatgttaatcgattaa |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1685763 |
atgcatgcataaagtataattttaactttttctgataatcgatttttgaagtttttagttcagttacgattgattttagctttttgtgttaatcgattaa |
1685664 |
T |
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| Q |
292 |
tcatacatgtttctgattgat--ttttgtgaaa-tttgaatgcagggaatgttatctcgtttggactgttcttc |
362 |
Q |
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||||||||||||||||||||| |||| ||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
1685663 |
tcatacatgtttctgattgatttttttctgaaattttgaatgaagggaatgttatctcgtttggactgttcttc |
1685590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 1685909 - 1685870
Alignment:
| Q |
25 |
cctctttcagcgtgttttctgtttcgcattctttgtgcag |
64 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| |
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| T |
1685909 |
cctctttcagtgtgttttctgtttcgcattctttgtgcag |
1685870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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