View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8779_low_7 (Length: 366)
Name: NF8779_low_7
Description: NF8779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8779_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 20 - 350
Target Start/End: Complemental strand, 30810539 - 30810205
Alignment:
| Q |
20 |
gtgttcatggatatagccgcgagccattattgtgtcaatattatattataatcatttgttaaaagaaggactaatgaatattgaagatagaataagtaaa |
119 |
Q |
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| T |
30810539 |
gtgttcatggatatagccgcgagccattgttgtgtcaatattatattataatcatttgttaaaagaaggactaatcaatattgaagatagaataagtaaa |
30810440 |
T |
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| Q |
120 |
taaatgttgaa--gagtttttatagtgtaaaagaaatttgaaggtaactatgtatttatata--atatagtagatgaagaggggtagacatacacattta |
215 |
Q |
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| T |
30810439 |
taaatgttgaatagagtttttatagtgtaaaagaaatttgaaggtaactttgtatttatatataatatagtagatgaagagaggtagacatacacattta |
30810340 |
T |
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| Q |
216 |
atgtgaggggagattgtgtgttcaaaacaaaaatgtgaagggaggttgtgcgtggagggggtgaagagaggttgaaagggaaaataaatgtgaagggagg |
315 |
Q |
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| T |
30810339 |
atgtgaggggagattgtgtgttcaaaacaaaaatgtgaagggaggttgtgcgtggagggggtgaagagaggttgaaagggaaaataaatgtgaagggagg |
30810240 |
T |
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| Q |
316 |
atttatttaacctgtacttaaagagtaggtgaaga |
350 |
Q |
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| T |
30810239 |
atttatttaacttgtacttaaagagtaggtgaaga |
30810205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 30 - 115
Target Start/End: Complemental strand, 30820209 - 30820124
Alignment:
| Q |
30 |
atatagccgcgagccattattgtgtcaatattatattataatcatttgttaaaagaaggactaatgaatattgaagatagaataag |
115 |
Q |
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| T |
30820209 |
atatagccgtgagtcactgttgtgccaatattatattatagtcatttgttaaaagaaggaccaatcaatattgaagttcgaataag |
30820124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 30814989 - 30814920
Alignment:
| Q |
44 |
cattattgtgtcaatattatattataatcatttgttaaaagaaggactaatgaatattgaagatagaataa |
114 |
Q |
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| T |
30814989 |
cattgttgtgtcaatattatattataatcatttgttaaaagaa-gaccaatcaatattgaaaataaaataa |
30814920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 276 - 318
Target Start/End: Complemental strand, 30814661 - 30814619
Alignment:
| Q |
276 |
gtgaagagaggttgaaagggaaaataaatgtgaagggaggatt |
318 |
Q |
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| T |
30814661 |
gtgaagagaggttgaaaggcaaaataaatgtgaagggaggatt |
30814619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 275 - 350
Target Start/End: Complemental strand, 30814560 - 30814486
Alignment:
| Q |
275 |
ggtgaagagaggttgaaagggaaaataaatgtgaagggaggattta-tttaacctgtacttaaagagtaggtgaaga |
350 |
Q |
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| T |
30814560 |
ggtgaagagaggttgaaag--acaataaatgtgaagggagaattgaatttaacttgtacttaaaaagtaggtgaaga |
30814486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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