View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8779_low_8 (Length: 348)
Name: NF8779_low_8
Description: NF8779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8779_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 9 - 336
Target Start/End: Original strand, 36239493 - 36239823
Alignment:
| Q |
9 |
agcagagatacaagggaagtaaagtttgttagaaggatcaagcttgagacgacgtcgtgttgggagaagcgatctagcaactgatgaaactgaatttgaa |
108 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36239493 |
agcagacatacaagggaagtaaagtttgttagaaggatcaagcttgagacgacgtcgtgttgggagaagcgatctagcaacagatgaaactgaatttgaa |
36239592 |
T |
|
| Q |
109 |
gtgtgagaagttgaaccttcaagaggagtgttactgttagggttatga---tgatgatgatgaaggttgttattaacagaagacgacgtcgtgttggtgg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36239593 |
gtgtgagaagttgaaccttcaagaggagtgttactgttagggttatgatgatgatgatgatgaaggttgttattaacagaagaagacgtcgtgttggtgg |
36239692 |
T |
|
| Q |
206 |
aagaagtgttagaatttcgaaaaggaagtttgaagaaattccaaaccttaggttcggagtgaggtttgggttcagctacggccatggtgggtgtctctct |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36239693 |
aagaagtgttagaatttcgaaaaggaagtttgaagaaattccaaaccttaggttcggagtgaagtttgggttcagctacggccatggtgggtgtctctct |
36239792 |
T |
|
| Q |
306 |
gttttgagaaaatgatgaaagaggaaaatga |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
36239793 |
gttttgagaaaatgatgaaagaggaaaatga |
36239823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University