View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8779_low_9 (Length: 338)
Name: NF8779_low_9
Description: NF8779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8779_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 4286381 - 4286173
Alignment:
| Q |
1 |
tatgcccagtgaaaattgaacagacctctacttttatgtgannnnnnnnngctaaggttatgccatgatgggccaagggaatgataacagagtcttgtct |
100 |
Q |
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| T |
4286381 |
tatgcccggtgaaaattgaacagacctctacgtttatgtgattcttttttgctaaggttatgccatgatgggccaagggaatgataacagagtcttgtct |
4286282 |
T |
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| Q |
101 |
taaatgaagagttagcttacttaattatcctcaagttcaatatacccagattgatttttatcaaaaaacttgaatgctctatggaggtgtatattattct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4286281 |
taaatgaagagttagcttacttaattatcctcaagttcaatataccgagattgatttttatcaaaaaacttgaatgctctatggaggtgtatatcattct |
4286182 |
T |
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| Q |
201 |
cagacgaat |
209 |
Q |
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|||| |||| |
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| T |
4286181 |
cagatgaat |
4286173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 221 - 320
Target Start/End: Complemental strand, 4284670 - 4284576
Alignment:
| Q |
221 |
tttcaacaataagaaggtgtattagcnnnnnnncaaaacaaagagtgtactaatagcactactcccaataacaagtttctttacaatttcgcgggcacag |
320 |
Q |
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| T |
4284670 |
tttcaacaataagaaggtgtattagcaaa-----aaaaaaaagagtgtactaatagcactactccaaataacaagtttcttcacaatttcgcgggcacag |
4284576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 21387149 - 21387211
Alignment:
| Q |
128 |
tcctcaagttcaatatacccagattgatttttatcaaaaaacttgaatgctctatggaggtgt |
190 |
Q |
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| T |
21387149 |
tcctcaagttcaataaacccagattcgtttttatcaaaaaattggaatgctctttggaggtgt |
21387211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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