View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8780_high_2 (Length: 485)
Name: NF8780_high_2
Description: NF8780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8780_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 4683370 - 4683666
Alignment:
| Q |
1 |
cttgttaggttctgataatgttttgatcagtcaagacttagatggaaggattaggaagcaggtgtggggttatgcctctaatgaaaaacttttctttgat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4683370 |
cttgttaggttctgataatgttttgatcagtcaagacttagatggaaggattaggaagcaggtgtggggttatgcctctaacgaaaaacttttctttgat |
4683469 |
T |
|
| Q |
101 |
tcctttgctaagtctatgattaagatgggaaatattaatgttcttactggaagtgaaggtgaaataagaaggaattgtagatttgtcaacccttaggtag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4683470 |
tcctttgctaagtctatgattaagatgggaaatattaatgttcttactggaagtgaaggtgaaataagaaggaattgtagatttgtcaacccttaggtag |
4683569 |
T |
|
| Q |
201 |
gtattatgtatttctatgatttgtaatagaaacttgtttggacttaattttattgcttgccttgaagaatatagttattactataaataaatgcaac |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4683570 |
gtattatgtatttctatgatttgtaatagaaacttgtttggacttaattttattgcttgccttgaagaatatagttattactataaataaatgcaac |
4683666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 308 - 476
Target Start/End: Original strand, 4683695 - 4683863
Alignment:
| Q |
308 |
tcaattcatggtttgctagatttttgcttgtttttcttttgcacgtgtaaacttacatagtacaagggcaaataaattctgtttacatatttaatcccct |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4683695 |
tcaattcatggtttgctagatttttgcttgtttttcttttgcacgtgtaaacttacatagtacaagggcaaataaattctgtttacatatttaatcccct |
4683794 |
T |
|
| Q |
408 |
tctatacactcatacttcctctttaggaatgcannnnnnnngtacaatatgaatgcatataagtataat |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
4683795 |
tctatacactcatacttcctctttaggaatgcatttcttttgtacaatatgaatgcatataattataat |
4683863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 10060334 - 10060272
Alignment:
| Q |
103 |
ctttgctaagtctatgattaagatgggaaatattaatgttcttactggaagtgaaggtgaaat |
165 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||| |||||||| ||| |||||||||| |
|
|
| T |
10060334 |
ctttgcgaaatctatgattaagatgggaaatattaagccacttactgggagtcaaggtgaaat |
10060272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University