View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8780_low_1 (Length: 520)
Name: NF8780_low_1
Description: NF8780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8780_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 242 - 508
Target Start/End: Original strand, 33499835 - 33500102
Alignment:
| Q |
242 |
gcaaatgcctgagttaaggaggaagaaagcaagttatagcacgtatgtaatgaagctatacaaataggatgcagtattgacatacacagacttgagggaa |
341 |
Q |
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| T |
33499835 |
gcaaatgcctgagttaaggaggaagaaaacaagttatagcacgtatgtaatgaagctatacaaataggatgcagtattgacatacacagacttgagggaa |
33499934 |
T |
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| Q |
342 |
gctgcaattttaagaatgatgaatataaacaaataaatccatattgacaaactaagctaccatgatttacactgtgtaaagtacatcaaattcatttcag |
441 |
Q |
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| T |
33499935 |
gctgcaattttaagaatgatgaatataaacaaataaatccatattgacaaactaagctaccatgatttacactgtgtaaagtacatcaaattcatttcgg |
33500034 |
T |
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| Q |
442 |
cagatttatggagggaaat-aaaaataatacagaataaacatttcacaagtcaaacttgagttcatct |
508 |
Q |
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| T |
33500035 |
cagatttatggagggaaataaaaaataatacagaataaacatttcacaagtcaaacttgagttcatct |
33500102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 33499612 - 33499781
Alignment:
| Q |
19 |
tctaggggtctgactcttgtcactactaccaaatattgtggcatttgacactttatcattcacacaatggacatcatttgacacctccggtgtcaaactg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33499612 |
tctaggggtctgactcttgtcactactaccaaatattgtggcatttgacactttatcattcacacaatggacatcatttgacacctctggtgtcaaactg |
33499711 |
T |
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| Q |
119 |
ttattataacgattgtttaacctttgacgagttacaatagatgaaagaagctggtaccacctacgaagag |
188 |
Q |
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| T |
33499712 |
ttattataacgattgtttaacctttgacgagttacaatagatgaaagaagctggtaccacctacgaagag |
33499781 |
T |
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