View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8780_low_3 (Length: 381)
Name: NF8780_low_3
Description: NF8780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8780_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 33135780 - 33136144
Alignment:
| Q |
1 |
ttagctttttcagacactcatccaatggaatgttgcttggtttccaccatagtttgacaccttcatcaccattactttccactcgtttgtctaattcctt |
100 |
Q |
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| T |
33135780 |
ttagcttttttagacactcatccaatggaatgttgcttggtttccaccatagtttgacaccttcatcaccattactttccactcgtttgtctaattcctt |
33135879 |
T |
|
| Q |
101 |
tgcatgacccaatgccctgaataatgaccatctctctggatccaaccccttaaataccctgacctcaccgccaaaatattgtagcttagggtttcttacn |
200 |
Q |
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| T |
33135880 |
tgcatgacccaatgccctgaataatgaccatctctctggatccagccccttaaataccctgacctcaccaccaaaatattgtagcttagggtttcttaca |
33135979 |
T |
|
| Q |
201 |
nnnnnncccttggtaaaaaagactgcagtaaatcctccacctaccacaaggcatacgaggacaattagtaacggggggaaagggaaagcagtaacttgta |
300 |
Q |
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| T |
33135980 |
aaaaaacccttggtaaaaaaaactgcagtaaatcctccacctaccacatggtatacgaggacaattagtaacggggggaaagggaaagcagtaacgtgta |
33136079 |
T |
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| Q |
301 |
tccaaataataaacatcattnnnnnnntatcaataaattcatgatttaagacaaaccaacatgat |
365 |
Q |
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| T |
33136080 |
tccaaataataaacatcattaaaaaaatatcaataaattcatgatttaagacaaaccaacatgat |
33136144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 9 - 276
Target Start/End: Complemental strand, 23313664 - 23313400
Alignment:
| Q |
9 |
ttcagacactcatccaatggaatgttgcttggtttccaccatagtttgacaccttcatcaccattactttcca-ctcgtttgtctaattcctttgcatga |
107 |
Q |
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| T |
23313664 |
ttcagacacttatccaatgccatgttgcttggtttccactatagtttgacac--tc-tcaattttactttccaactc-tttgtccaagtcttttgcataa |
23313569 |
T |
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| Q |
108 |
cccaatgcc-ctgaataatgaccatctctctggatccaaccccttaaataccctgacctcaccgccaaaatattgtagcttagggtttcttacnnnnnnn |
206 |
Q |
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|| | |||| | ||||| ||||| | ||||||||||| ||||||||||| | |||||| | |||||||| ||||||| |||||||||||| |
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| T |
23313568 |
ccaagtgcctcaaaataa-gaccacttttctggatccaatcccttaaatactccaacctcaacaccaaaataatgtagctgagggtttcttacaaaaaaa |
23313470 |
T |
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| Q |
207 |
cccttggtaaaaaagactgcagtaaatcctccacctaccacaaggcatacgaggacaattagtaacgggg |
276 |
Q |
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||||||||||||| ||| ||||||||||||||||||| || | |||| ||| ||||||||||| |||| |
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| T |
23313469 |
cccttggtaaaaatgacagcagtaaatcctccacctaacatatctcatatgagtacaattagtaatgggg |
23313400 |
T |
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