View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8781_high_11 (Length: 444)

Name: NF8781_high_11
Description: NF8781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8781_high_11
NF8781_high_11
[»] chr4 (4 HSPs)
chr4 (14-429)||(1979557-1979974)
chr4 (208-299)||(42266275-42266366)
chr4 (208-299)||(48701675-48701766)
chr4 (208-299)||(30950037-30950128)
[»] chr8 (1 HSPs)
chr8 (208-299)||(9443946-9444037)
[»] chr6 (1 HSPs)
chr6 (208-299)||(27878563-27878654)
[»] chr5 (1 HSPs)
chr5 (208-299)||(41718782-41718873)
[»] chr3 (2 HSPs)
chr3 (208-299)||(5823129-5823220)
chr3 (208-294)||(2817117-2817203)
[»] chr2 (3 HSPs)
chr2 (221-381)||(13843664-13843825)
chr2 (208-299)||(825851-825942)
chr2 (385-427)||(13843865-13843907)
[»] chr7 (3 HSPs)
chr7 (208-299)||(25441131-25441222)
chr7 (228-299)||(8138338-8138409)
chr7 (332-387)||(8139943-8139998)


Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 14 - 429
Target Start/End: Complemental strand, 1979974 - 1979557
Alignment:
Q  14 cacacacgtccaagccacaaaatccttcaccc-gtgtcaattgaagcatctccttcaaatattcaactaactcaaaacctaannnnnnnn-acaccgttt 111  Q
    ||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||    
T  1979974 cacacacgtccaagccacaaaatctgtcaccccgtgtcaattgaagcatctccttcaaatattcaactaactcaaaacctaatttttttttacaccgttt 1979875  T
Q  112 ctaaaccctagaaattctaccccgaaatatagtagagtatctatcaacataatataaacctctcccaagatgaacaccctctaggaaccaatttcccaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1979874 ctaaaccctagaaattctaccccgaaatatagtagagtatctatcaacataatataaacctctcccaagatgaacaccctctaggaaccaatttcccaaa 1979775  T
Q  212 ctagactggaataattagaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttcttatcactgcaccaaagttc 311  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||| |||    
T  1979774 ctagactggaataattagaattcgtttatgatgtggaatattagtctaaactgcaaccatataacaaactaagatttttcttaccactacaccaaatttc 1979675  T
Q  312 tcagcggaacaaggatcgcaaaccaatggctttgataccactattggatatcagagtaacaaaatattataacacacattatttacgtggaaacccctca 411  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1979674 tcagcggaacaaggatcgcaaaccaatggctttgataccgctgttggatatcagagtaacaaaatattataacacacaatatttacgtggaaacccctca 1979575  T
Q  412 acagataaagagaaaagt 429  Q
    ||| ||||||||||||||    
T  1979574 acaaataaagagaaaagt 1979557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 299
Target Start/End: Complemental strand, 42266366 - 42266275
Alignment:
Q  208 caaactagactggaataattagaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttcttatcact 299  Q
    |||||||||| |||||||| ||||||| ||| |||| ||||| || ||| ||||| ||||||| | | ||||||||||||||||||| ||||    
T  42266366 caaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcatactaagatttttcttaccact 42266275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 48701675 - 48701766
Alignment:
Q  208 caaactagactggaataattagaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttcttatcact 299  Q
    |||||||||| |||||||| ||||||| ||| |||| ||||| || ||| ||||| ||||||| | | ||||||||||||||||||| ||||    
T  48701675 caaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcatactaagatttttcttaccact 48701766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 30950037 - 30950128
Alignment:
Q  208 caaactagactggaataattagaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttcttatcact 299  Q
    |||||||||| ||| |||| ||||||| ||| |||| ||||| || ||| ||||| ||||||| | | ||||||||||||||||||| ||||    
T  30950037 caaactagaccggagtaataagaattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcatactaagatttttcttaccact 30950128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 9443946 - 9444037
Alignment:
Q  208 caaactagactggaataattagaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttcttatcact 299  Q
    |||||||||| |||||||| ||||||| ||| |||| ||||| || ||| ||||| ||||||| | | ||||||||||||||||||| ||||    
T  9443946 caaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcatactaagatttttcttaccact 9444037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 27878563 - 27878654
Alignment:
Q  208 caaactagactggaataattagaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttcttatcact 299  Q
    |||||||||| |||||||| ||||||| ||| |||| ||||| || ||| ||||| ||||||| | | ||||||||||||||||||| ||||    
T  27878563 caaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcatactaagatttttcttaccact 27878654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 299
Target Start/End: Complemental strand, 41718873 - 41718782
Alignment:
Q  208 caaactagactggaataattagaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttcttatcact 299  Q
    |||||||||| |||||||| ||||||| ||| |||| ||||| || ||| ||||| ||||||| | | ||||||||||||||||||| ||||    
T  41718873 caaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcatactaagatttttcttaccact 41718782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 5823129 - 5823220
Alignment:
Q  208 caaactagactggaataattagaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttcttatcact 299  Q
    |||||||||| |||||||| ||||||| ||| |||| ||||| || ||| ||||| ||||||| | | ||||||||||||||||||| ||||    
T  5823129 caaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcatactaagatttttcttaccact 5823220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 2817117 - 2817203
Alignment:
Q  208 caaactagactggaataattagaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttctta 294  Q
    |||||||||| |||||||| ||||||| ||| |||| ||||| || ||| |||||  |||||| ||| |||||||||||||||||||    
T  2817117 caaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccacaaccacatagcatactaagatttttctta 2817203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 381
Target Start/End: Original strand, 13843664 - 13843825
Alignment:
Q  221 aataattagaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttcttatcactgcaccaaagttct-cagcgga 319  Q
    |||||| ||||||  ||| |||| ||||| || | |||| | |||||||| |||||||||||| |||||||||| |||| |||||   | || |||||||    
T  13843664 aataataagaatttttttttgatgtggaaaatcaatctatattgcaaccacataacatactaatatttttcttaccactccaccagtttgctacagcgga 13843763  T
Q  320 acaaggatcgcaaaccaatggctttgataccactattggatatcagagtaacaaaatattat 381  Q
    ||||  ||| | | ||||||||| | ||||||||  ||| ||||||||||| ||||||||||    
T  13843764 acaactatcacgagccaatggctctaataccacttgtggctatcagagtaataaaatattat 13843825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 299
Target Start/End: Complemental strand, 825942 - 825851
Alignment:
Q  208 caaactagactggaataattagaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttcttatcact 299  Q
    |||||||||| |||| ||| ||||||| ||| |||| ||||| || ||| ||||| ||||||| | | ||||||||||||||||||| ||||    
T  825942 caaactagaccggaacaataagaattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcatactaagatttttcttaccact 825851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 427
Target Start/End: Original strand, 13843865 - 13843907
Alignment:
Q  385 acacattatttacgtggaaacccctcaacagataaagagaaaa 427  Q
    ||||| |||||||||||||||||||||||| |||| |||||||    
T  13843865 acacaatatttacgtggaaacccctcaacaaataaggagaaaa 13843907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 299
Target Start/End: Complemental strand, 25441222 - 25441131
Alignment:
Q  208 caaactagactggaataattagaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttcttatcact 299  Q
    |||||||||| |||||||| ||||||| |||||||| || || || ||| || || ||||||| | | ||||||||||||||||||| ||||    
T  25441222 caaactagacaggaataataagaattcttttatgatgtgaaagatcagtttacaccgcaaccacagagcatactaagatttttcttaccact 25441131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 8138338 - 8138409
Alignment:
Q  228 agaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttcttatcact 299  Q
    ||||||| |||||||| |||||  | |||||||||  |||||| ||| ||||||||||||||||||| ||||    
T  8138338 agaattcttttatgatgtggaagttcagtctaaaccacaaccaaatagcatactaagatttttcttaccact 8138409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 387
Target Start/End: Original strand, 8139943 - 8139998
Alignment:
Q  332 aaccaatggctttgataccactattggatatcagagtaacaaaatattataacaca 387  Q
    ||||||||||| | |||||||| |||| || ||||||||||||||||||| |||||    
T  8139943 aaccaatggctctaataccactgttgggtaccagagtaacaaaatattatcacaca 8139998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University