View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8781_high_12 (Length: 423)

Name: NF8781_high_12
Description: NF8781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8781_high_12
NF8781_high_12
[»] chr5 (1 HSPs)
chr5 (1-407)||(39252497-39252893)
[»] chr1 (3 HSPs)
chr1 (261-314)||(35201495-35201548)
chr1 (261-314)||(35202375-35202428)
chr1 (261-309)||(37643843-37643891)
[»] chr3 (2 HSPs)
chr3 (258-312)||(47007765-47007819)
chr3 (261-312)||(47007023-47007074)
[»] chr2 (4 HSPs)
chr2 (259-303)||(29308399-29308443)
chr2 (259-303)||(29309102-29309146)
chr2 (259-314)||(4161336-4161390)
chr2 (259-303)||(29283910-29283954)
[»] chr8 (2 HSPs)
chr8 (261-314)||(33520893-33520946)
chr8 (261-303)||(33520216-33520258)
[»] chr6 (1 HSPs)
chr6 (259-314)||(4275070-4275125)
[»] scaffold0143 (1 HSPs)
scaffold0143 (261-303)||(1625-1667)


Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 39252893 - 39252497
Alignment:
Q  1 tgattgtctgcgttgtggaatttcaagatgcattcctataactcctctggtaaactctggtaaatatgaacatgcttctgccatcattcttgtttgaaaa 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39252893 tgattgtctgcgttgtggaatttcaagatgcattcccataactcctctggtaaactctggtaaatatgaacatgcttctgccatcattcttgtttgaaaa 39252794  T
Q  101 ttcgatgatctgctccttctatgacaaaaggatggtgatgccgccatcgttagttaccaccgatttctctcaattcattcactcactttcattatataga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  39252793 ttcgatgatctgctccttctatgacaaaaggatggtgatgccgccatcgttagttaccaccgatttctctcaattcattcactcactttcattata---- 39252698  T
Q  201 cgcccctaaattaaaacatagatatttcctatttttatgggttgactatctcctcattgagtgcagatcctctccatttagggaggaaatggccatctca 300  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39252697 ------taaattaaaacatagatatttcctatttttatgggttgactatctcctcattgagtgcagatcctctccattttgggaggaaatggccatctca 39252604  T
Q  301 attacctttcataacagcgtaaggcagtttacacattagcctatcggaattaaactctaactttctctaataataatactccctcataatctgactttca 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39252603 attacctttcataacagcgtaaggcagtttacacattagcctatcggaattaaactctaactttctctaatagtaatactccctcataatctgactttca 39252504  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 261 - 314
Target Start/End: Original strand, 35201495 - 35201548
Alignment:
Q  261 gtgcagatcctctccatttagggaggaaatggccatctcaattacctttcataa 314  Q
    ||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||    
T  35201495 gtgcagatcctctccatttggggagtaaatggccatctcaatttcctttcataa 35201548  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 261 - 314
Target Start/End: Complemental strand, 35202428 - 35202375
Alignment:
Q  261 gtgcagatcctctccatttagggaggaaatggccatctcaattacctttcataa 314  Q
    ||||||||||||||||||| | ||||||||||||||||||||| ||||||||||    
T  35202428 gtgcagatcctctccatttggtgaggaaatggccatctcaatttcctttcataa 35202375  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 309
Target Start/End: Complemental strand, 37643891 - 37643843
Alignment:
Q  261 gtgcagatcctctccatttagggaggaaatggccatctcaattaccttt 309  Q
    ||||| ||||||||||||||||||| ||||| | ||||||||| |||||    
T  37643891 gtgcatatcctctccatttagggagaaaatgacaatctcaatttccttt 37643843  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 258 - 312
Target Start/End: Complemental strand, 47007819 - 47007765
Alignment:
Q  258 tgagtgcagatcctctccatttagggaggaaatggccatctcaattacctttcat 312  Q
    ||||||||||||||||||||||||||||||||| || ||||||||| || |||||    
T  47007819 tgagtgcagatcctctccatttagggaggaaattgcaatctcaatttccattcat 47007765  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 47007023 - 47007074
Alignment:
Q  261 gtgcagatcctctccatttagggaggaaatggccatctcaattacctttcat 312  Q
    |||||||||||||||||||||||||||||| || ||||||||| || |||||    
T  47007023 gtgcagatcctctccatttagggaggaaattgcaatctcaatttccattcat 47007074  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 29308443 - 29308399
Alignment:
Q  259 gagtgcagatcctctccatttagggaggaaatggccatctcaatt 303  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  29308443 gagtgcagatcctctccatttagggaggaaattgcaatctcaatt 29308399  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 29309102 - 29309146
Alignment:
Q  259 gagtgcagatcctctccatttagggaggaaatggccatctcaatt 303  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  29309102 gagtgcagatcctctccatttagggaggaaattgcaatctcaatt 29309146  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 314
Target Start/End: Complemental strand, 4161390 - 4161336
Alignment:
Q  259 gagtgcagatcctctccatttagggaggaaatggccatctcaattacctttcataa 314  Q
    ||||||||||||||||||||| |||| ||||| || ||||||||| ||||||||||    
T  4161390 gagtgcagatcctctccatttgggga-gaaattgcaatctcaatttcctttcataa 4161336  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 29283954 - 29283910
Alignment:
Q  259 gagtgcagatcctctccatttagggaggaaatggccatctcaatt 303  Q
    ||||| |||||||||||||||||||||||||| || |||| ||||    
T  29283954 gagtgtagatcctctccatttagggaggaaattgcaatctaaatt 29283910  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 314
Target Start/End: Complemental strand, 33520946 - 33520893
Alignment:
Q  261 gtgcagatcctctccatttagggaggaaatggccatctcaattacctttcataa 314  Q
    ||||||||||||||||||| | ||||||||||||||| ||||| ||||| ||||    
T  33520946 gtgcagatcctctccatttggtgaggaaatggccatcacaatttcctttaataa 33520893  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 303
Target Start/End: Original strand, 33520216 - 33520258
Alignment:
Q  261 gtgcagatcctctccatttagggaggaaatggccatctcaatt 303  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  33520216 gtgcagatcctctccattttatgaggaaatggccatctcaatt 33520258  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 314
Target Start/End: Original strand, 4275070 - 4275125
Alignment:
Q  259 gagtgcagatcctctccatttagggaggaaatggccatctcaattacctttcataa 314  Q
    |||| ||||||||||||||||||| || ||||||| ||||||||| || |||||||    
T  4275070 gagtacagatcctctccatttaggtagaaaatggcaatctcaatttccattcataa 4275125  T

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Target: scaffold0143 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 303
Target Start/End: Original strand, 1625 - 1667
Alignment:
Q  261 gtgcagatcctctccatttagggaggaaatggccatctcaatt 303  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  1625 gtgcagatcctctccattttatgaggaaatggccatctcaatt 1667  T

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