View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8781_high_17 (Length: 376)
Name: NF8781_high_17
Description: NF8781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8781_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 21 - 370
Target Start/End: Complemental strand, 37693305 - 37692961
Alignment:
| Q |
21 |
gcgtaactgtcgataaaagtgctaagactcttgagaactcaagaagcatgctcttggtgatgatgacctatagaaggaggcaaagaatagagctcataac |
120 |
Q |
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| T |
37693305 |
gcgtaactgtcgataaaagttctaagactcttgagaactcaagaagcatgctcttggtgatgatgacctatagaaggaggcaaagaatagagctcataac |
37693206 |
T |
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| Q |
121 |
gtccaagcccttgtggcaaaaaacggattgcggtcgccacacccacgcggccacaatggtagtgtgccaaatgcatgccttccttctacttgtgcatgtg |
220 |
Q |
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| T |
37693205 |
gtccaagcccttgtggcaaaacacagattgcggttgccacacccacgcggccacaatggtagtgtgccaa----atgccttccttctacttgtgcatgtg |
37693110 |
T |
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| Q |
221 |
cgagttcctctttcagaaatgatgttggggagccccaattgccatcattattattgaggcactacaaaccctcatcagggaattacgaaacccaaggttt |
320 |
Q |
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||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
37693109 |
cgagttcgtctttcagaaatgatgttgggg-gccccaattgccatcattattattgaggcactgcaaaccctcatcagggaattacaaaacccaaggttt |
37693011 |
T |
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| Q |
321 |
caaaagttggctcgccaaagttgaacaagcatatgtaactaagaataatc |
370 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
37693010 |
caaaagttggctcgccaaagttaaacaagcatatgtaactaagaagaatc |
37692961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 25 - 360
Target Start/End: Complemental strand, 37590997 - 37590666
Alignment:
| Q |
25 |
aactgtcgataaaagtgctaagactcttgagaactcaagaagcatgctcttggtgatgatgacctatagaaggaggcaaagaatagagctcataacgtcc |
124 |
Q |
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| T |
37590997 |
aactgtcgataaaagttctaagactcttgagaactcaagaagcatgctcttggtgatgatgatctatagaaggaggcaaagaatagagctcataacgtcc |
37590898 |
T |
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| Q |
125 |
aagcccttgtggcaaaaaacggattgcggtcgccacacccacgcggccacaatggtagtgtgccaaatgcatgccttccttctacttgtgcatgtgcgag |
224 |
Q |
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| T |
37590897 |
aagcccttgtggcaaaacacagattgcggtcgccacacccacgcggccacaatggtagtgtgccaa----atgccttccttctacttgtgcatgtgcgag |
37590802 |
T |
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| Q |
225 |
ttcctctttcagaaatgatgttggggagccccaattgccatcattattattgaggcactacaaaccctcatcagggaattacgaaacccaaggtttcaaa |
324 |
Q |
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||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
37590801 |
ttcgtctttcagaaatgatgttggggggccccaattgccatcattattattgaggcactgcaaaccctcatcagggaattacaaaacccaaggtttcaaa |
37590702 |
T |
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| Q |
325 |
agttggctcgccaaagttgaacaagcatatgtaact |
360 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
37590701 |
agttggctcgccaaagttgaacaagcatatgtaact |
37590666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 21 - 370
Target Start/End: Complemental strand, 37528855 - 37528511
Alignment:
| Q |
21 |
gcgtaactgtcgataaaagtgctaagactcttgagaactcaagaagcatgctcttggtgatgatgacctatagaaggaggcaaagaatagagctcataac |
120 |
Q |
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|||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37528855 |
gcgtaactgttgataaaagttccaagactcttgagaactcaagaagcatgctcttggtgatgatgacctatagaaggaggcaaagaatagagctcataac |
37528756 |
T |
|
| Q |
121 |
gtccaagcccttgtggcaaaaaacggattgcggtcgccacacccacgcggccacaatggtagtgtgccaaatgcatgccttccttctacttgtgcatgtg |
220 |
Q |
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||||||||||||||||||||| || ||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
37528755 |
gtccaagcccttgtggcaaaacacagattgcggttgccacgcccacgcggccacaatggtagtgtgccaa----atgccttccttctacttgtgcacgtg |
37528660 |
T |
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| Q |
221 |
cgagttcctctttcagaaatgatgttggggagccccaattgccatcattattattgaggcactacaaaccctcatcagggaattacgaaacccaaggttt |
320 |
Q |
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||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
37528659 |
cgagttcgtctctcagaaatgatgttgggg-gccccaattgccatcattattattgaggcactgcaaaccctcatcagggaattacaaaacccaaggttt |
37528561 |
T |
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| Q |
321 |
caaaagttggctcgccaaagttgaacaagcatatgtaactaagaataatc |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37528560 |
caaaagttggctcgccaaagttgaacaagcatatgtaactaagaagaatc |
37528511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 161
Target Start/End: Complemental strand, 14551340 - 14551229
Alignment:
| Q |
52 |
tgagaactcaagaagcatgctctt--ggtgatgatgacctatagaaggaggcaaagaatagagctcataacgtccaagcccttgtggcaaaaaacggatt |
149 |
Q |
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||||| |||||||| |||||| || |||||||| |||||||||||||||| |||||||||||||| |||||| ||| ||||||| | ||| ||||||| |
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| T |
14551340 |
tgagagctcaagaaacatgctttttaggtgatgaagacctatagaaggaggaaaagaatagagctcctaacgttcaaatccttgtgtccaaacacggatt |
14551241 |
T |
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| Q |
150 |
gcggtcgccaca |
161 |
Q |
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| T |
14551240 |
gtggtcgacaca |
14551229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 172 - 272
Target Start/End: Complemental strand, 14551232 - 14551133
Alignment:
| Q |
172 |
cacaatggtagtgtgccaaatgcatgccttccttctacttgtgcatgtgcgagttcctctttcagaaatgatgttggggagccccaattgccatcattat |
271 |
Q |
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||||||||| ||||||||||||| | ||||| | || |||||| |||||| || ||||| |||| ||||||||||||||||||||||||| |||||| |
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| T |
14551232 |
cacaatggtggtgtgccaaatgccttccttc-tactttttgtgcgcgtgcgaatttgtctttgagaattgatgttggggagccccaattgccaccattat |
14551134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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