View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8781_high_20 (Length: 355)

Name: NF8781_high_20
Description: NF8781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8781_high_20
NF8781_high_20
[»] chr2 (1 HSPs)
chr2 (12-355)||(19102527-19102870)
[»] chr3 (1 HSPs)
chr3 (12-355)||(36030634-36030977)


Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 12 - 355
Target Start/End: Original strand, 19102527 - 19102870
Alignment:
Q  12 acatcaaaatttggggttcgaccccattgaaggagatacaacgcagcacttggagcatacaaacagcccacctcccccggaaaccacgcaacaacagaca 111  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  19102527 acatcaaaatttggggtccgacaccattgaaggagatacaacgcagcacttggagcatacaaacagcccacctcccccggaaaccatgcaacaacagaca 19102626  T
Q  112 ccacaacaggcagccactgttgcgcccattactcatgaagttgcgccattggaggtggcagaagaacatcaatctattgacaatgcagccattccggttg 211  Q
    |||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  19102627 ccacaataggcatccactgttgcgcccattactcatgaagttgtgccattggaggtggcagaagaacatcaatctattgacaatgctgccattccgattg 19102726  T
Q  212 ttgatgatataaatgagcaccatgacatcgatattcataccacaaccaacgtggaagcagacaaggagcagcaggaagacacaacaaccatatcatcttc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||    
T  19102727 ttgatgatataaatgagcaccatgacatcgatattcataccacaaccaacgtggaagcagacacggagcagcatgaagacacaacaaccatatcaccttc 19102826  T
Q  312 tccagatgtcacggaaaatcgcaatattgatatctctcataatt 355  Q
    ||||||||| |||| |||||||||||||||||||||||||||||    
T  19102827 tccagatgttacggtaaatcgcaatattgatatctctcataatt 19102870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 12 - 355
Target Start/End: Complemental strand, 36030977 - 36030634
Alignment:
Q  12 acatcaaaatttggggttcgaccccattgaaggagatacaacgcagcacttggagcatacaaacagcccacctcccccggaaaccacgcaacaacagaca 111  Q
    ||||||||||||||||| |||| ||||||||||||||||||| || ||||||||||||||||||| |||||||||| ||||||||||||||||| |||||    
T  36030977 acatcaaaatttggggtccgacaccattgaaggagatacaacacatcacttggagcatacaaacaacccacctccctcggaaaccacgcaacaatagaca 36030878  T
Q  112 ccacaacaggcagccactgttgcgcccattactcatgaagttgcgccattggaggtggcagaagaacatcaatctattgacaatgcagccattccggttg 211  Q
    |||||||| | |||||||| |||||| ||| |||||||||||| |   |||||||||||||||| ||||||||||||||||||||  |||||||||||||    
T  36030877 ccacaacaagaagccactgctgcgcctattcctcatgaagttgtgttgttggaggtggcagaagtacatcaatctattgacaatgttgccattccggttg 36030778  T
Q  212 ttgatgatataaatgagcaccatgacatcgatattcataccacaaccaacgtggaagcagacaaggagcagcaggaagacacaacaaccatatcatcttc 311  Q
    ||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||| ||| ||||||||||||||| |||| |||||||||| ||||    
T  36030777 ttgatgatataaatgagcaccatgacatcgatattaatgccacaatcaacgtggaagcatacacggagcagcaggaagatacaataaccatatcaccttc 36030678  T
Q  312 tccagatgtcacggaaaatcgcaatattgatatctctcataatt 355  Q
    ||   |||| | || |||||||||||||||||||||||| ||||    
T  36030677 tctgaatgttatggtaaatcgcaatattgatatctctcagaatt 36030634  T

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