View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8781_high_21 (Length: 349)
Name: NF8781_high_21
Description: NF8781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8781_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 40 - 332
Target Start/End: Original strand, 16784548 - 16784840
Alignment:
| Q |
40 |
tgaaaatgatacacatcttgaaaattgaatggtggcttgggattggttgagagtatttcagacataatgattactcaaatccaaaggatattatatttat |
139 |
Q |
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| T |
16784548 |
tgaaaatgatacacatcttgaaaattgaatggtggcttgggattggttgagagtatttcagacataatgattactcaaatccaaaggatattatatttat |
16784647 |
T |
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| Q |
140 |
agagctgggttgtagatgcctagatggtacgtgggctcttgacaggcttgttgaggtcggtcatgacttaagtgcttcttctgatttgaaagaaacttgg |
239 |
Q |
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| T |
16784648 |
agagctgggttgtagatgcctagatggtacgtgggctcttgacaggcttgttgaggtcggtcatgacttaagtgcttcttctgatttgaaagaaacttgg |
16784747 |
T |
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| Q |
240 |
aaaattttagttgagaattttgagtaacacgtggcatctgtcacaaggaatgtttttacttacataaatagataaagtatgctcttattatgt |
332 |
Q |
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| T |
16784748 |
aaaattttagttgagaattttgagtaacacgtggcatctgtcacaagggatgtttttacttacataaatagataaagtatgctcttattatgt |
16784840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 134
Target Start/End: Complemental strand, 12637209 - 12637118
Alignment:
| Q |
42 |
aaaatgatacacatcttgaaaattgaatggtggcttgggattggttgagagtatttcagacataatgattactcaaatccaaaggatattata |
134 |
Q |
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| T |
12637209 |
aaaatgatgcacatctggaaaattcaatggtggctttggattggttgtgtgcatttatgacttaatgattactc-aatccaaaggatattata |
12637118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 265
Target Start/End: Complemental strand, 12637042 - 12637006
Alignment:
| Q |
229 |
aagaaacttggaaaattttagttgagaattttgagta |
265 |
Q |
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| T |
12637042 |
aagaaacttggaaaatttttgttgagaatttttagta |
12637006 |
T |
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