View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8781_high_24 (Length: 317)
Name: NF8781_high_24
Description: NF8781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8781_high_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 19 - 306
Target Start/End: Original strand, 6868332 - 6868619
Alignment:
| Q |
19 |
tttgtcatcggtggatgaagaagttggagaatcataactaacgtcggaacggatttgaacggtggttttggataagggtgatttgtgtttgggggtattt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6868332 |
tttgtcatcggtggatgaagaagttggagaatcataactaacgtcggaacggatttgaacggtggttttggataagggtgatttgtgtttgggggtattt |
6868431 |
T |
|
| Q |
119 |
gagattgggaggaagtggttttgatggagaagtggttttttagagaagctggtttgagtaggttgtgagtgtaaggaagaaacgttgccgttgagaagag |
218 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6868432 |
gagattgggaggaagtgggtttgatggagaagtggttttttagagaagctggtttgagtaggttgtgagtgtaaggaagaaacgttgccgttgagaagag |
6868531 |
T |
|
| Q |
219 |
aagccatagagataatttgtttggtggagtatgcaaagtgattatgtggtgtgtttaataatggttgtgtataagttcagcccttctt |
306 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6868532 |
aagccatagaggaaattggtttggtggagtatgcaaagtgattatgtggtgtgtttaataatggttgtgtataagttcagcccttctt |
6868619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 5e-50; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 53 - 225
Target Start/End: Complemental strand, 14080394 - 14080228
Alignment:
| Q |
53 |
taactaacgtcggaacggatttgaacggtggttttggataagggtgatttgtgtttgggggtatttgagattgggaggaagtggttttgatggagaagtg |
152 |
Q |
| |
|
||||||||||| |||||||||| |||||| ||||||||| |||||||| ||||||||||| ||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
14080394 |
taactaacgtctgaacggattttaacggt---tttggataacggtgatttttgtttgggggtttttgagattggga---agtgggtttgatggagaagtg |
14080301 |
T |
|
| Q |
153 |
gttttttagagaagctggtttgagtaggttgtgagtgtaaggaagaaacgttgccgttgagaagagaagccat |
225 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14080300 |
ctttttttgagaagctggtttgagtgggttgtgggtgtaaggaagaaacgctgccgttgagaagagaagccat |
14080228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 53 - 225
Target Start/End: Complemental strand, 14390422 - 14390256
Alignment:
| Q |
53 |
taactaacgtcggaacggatttgaacggtggttttggataagggtgatttgtgtttgggggtatttgagattgggaggaagtggttttgatggagaagtg |
152 |
Q |
| |
|
||||||||||| |||||||||| |||||| ||||||||| |||||||| ||||||||||| ||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
14390422 |
taactaacgtctgaacggattttaacggt---tttggataacggtgatttttgtttgggggtttttgagattggga---agtgggtttgatggagaagtg |
14390329 |
T |
|
| Q |
153 |
gttttttagagaagctggtttgagtaggttgtgagtgtaaggaagaaacgttgccgttgagaagagaagccat |
225 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14390328 |
ctttttttgagaagctggtttgagtgggttgtgggtgtaaggaagaaacgctgccgttgagaagagaagccat |
14390256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 303
Target Start/End: Complemental strand, 14080121 - 14080083
Alignment:
| Q |
265 |
tggtgtgtttaataatggttgtgtataagttcagccctt |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14080121 |
tggtgtgtttaataatggttgtgtataagttcaaccctt |
14080083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 303
Target Start/End: Complemental strand, 14390149 - 14390111
Alignment:
| Q |
265 |
tggtgtgtttaataatggttgtgtataagttcagccctt |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14390149 |
tggtgtgtttaataatggttgtgtataagttcaaccctt |
14390111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University