View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8781_high_25 (Length: 299)

Name: NF8781_high_25
Description: NF8781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8781_high_25
NF8781_high_25
[»] chr7 (1 HSPs)
chr7 (17-299)||(48141550-48141832)


Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 17 - 299
Target Start/End: Complemental strand, 48141832 - 48141550
Alignment:
Q  17 tcccatttgtacagaagaaagcaagtaataatttatttacacgggtgattttctgatttttgaaggtttcatttaactaagcagtgtgagttaaggatgg 116  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48141832 tcccatttgtacataagaaagcaagtaataatttatttacacgggtgattttctgatttttgaaggtttcatttaactaagcagtgtgagttaaggatgg 48141733  T
Q  117 agatctgttgaccctctccagtataccgctagccttccttttcgcccttgaagttccgcattgtgcgagcttagataacgtcccattggtcttttcttct 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48141732 agatctgttgaccctctccagtataccgctagccttccttttcgcccttgaagttccgcattgtgcgagcttagataacgtcccattggtcttttcttct 48141633  T
Q  217 tctttgatttccctccacattgttctatcattataacagattgtatataggattgcaatgcaattttctttgcatctttctga 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48141632 tctttgatttccctccacattgttctatcattataacagattgtatataggattgcaatgcaattttctttgcatctttctga 48141550  T

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