View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8781_high_29 (Length: 261)
Name: NF8781_high_29
Description: NF8781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8781_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 47810362 - 47810601
Alignment:
| Q |
18 |
tcaacttattcaagttctggaagcacttaaacaagcttctcaaaacatccaaaatcaccataatcacttctcagattccaattcatcttccataaaagca |
117 |
Q |
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| T |
47810362 |
tcaacttattcaagttctggaagcacttaaacaagcttctcaaaacatccaaaatcaccataatcacttctcagattccaattcatcttccataaaagca |
47810461 |
T |
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| Q |
118 |
cttttccaactccacacaattcttccaactaattcaaacatctctcaccacctcacccacctcaaatccctagtcagctcgctccaaagctcaaaaccga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47810462 |
cttttccaactccacacaattcttccaactaattcaaacatctctcaccacctcacccacctcaaatccctagtcaactcgctccaaagctcaaaaccga |
47810561 |
T |
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| Q |
218 |
gtctcaaatcgttcataactcgtcccatttcatctcactc |
257 |
Q |
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|||||||||||||||||||||||||| | ||||||||||| |
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| T |
47810562 |
gtctcaaatcgttcataactcgtcccctctcatctcactc |
47810601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 82 - 257
Target Start/End: Complemental strand, 3928704 - 3928529
Alignment:
| Q |
82 |
cacttctcagattccaattcatcttccataaaagcacttttccaactccacacaattcttccaactaattcaaacatctctcaccacctcacccacctca |
181 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3928704 |
cacttctcagattccaattcatcttccataaaagcacttttccaactccacacaattcttccaactaattcaaacatctctcaccacctcacccacctca |
3928605 |
T |
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| Q |
182 |
aatccctagtcagctcgctccaaagctcaaaaccgagtctcaaatcgttcataactcgtcccatttcatctcactc |
257 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3928604 |
aatccctagtcaactcgctccaaagctcaaaaccgagtctcaaatcgttcataactcgtcccatctcatctcactc |
3928529 |
T |
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