View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8781_high_3 (Length: 550)
Name: NF8781_high_3
Description: NF8781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8781_high_3 |
 | |
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| [»] scaffold0376 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 477; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 1 - 545
Target Start/End: Original strand, 15475412 - 15475956
Alignment:
| Q |
1 |
tcagggttattcgaggttttcgatatgaaggtggtacttctactactagtagtaaggtttttgtttatgatggcttgtataagataattgaattttggtt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15475412 |
tcagggttattcgaggttttcgatatgaaggtgctacttctactactagtagtaaggtttttgtttatgatggcttgtataagataattgaattttggtt |
15475511 |
T |
|
| Q |
101 |
tgaaaaaggtatatctgggtttggtgtttataagtttaagctatcaagggttcaaggtcaacctaagatgggtagtatgatccttaaggaagccagtatg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
15475512 |
tgaaaaaggtatatctgggtttggtgtttataagtttatgttatcaagggttcaaggtcaacctaagatgggtagtatgatccttaaggaagctagtatg |
15475611 |
T |
|
| Q |
201 |
cttatgagaggccatttatgtgataatcatatgtatgtcctttctgatgatatttcaaatgggaaggagaatattggtgtgaggctatataatgacattg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15475612 |
cttatgagaggccatttatgtgataatcatatgtgtgtcctttctgatgatatttccaatgggaaggagaatattggtgtgaggctatataatgacattg |
15475711 |
T |
|
| Q |
301 |
atagtgatctctatcctatgcaatttgagtatctcccgaaggcggcatttccaatgttcttgcttcctcatagtatgacgacaacgaaaaagatgagggt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |
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|
| T |
15475712 |
atagtgatctctatcctatgcaatttgagtatctcccgaaagcggcatttccaatgttcttgcttcctcaaagtatgacgacgaggaaaaagatgagggt |
15475811 |
T |
|
| Q |
401 |
gatagagtgttctgaatgcgttgatggatgtgtttcttcaatcatgaatggcaacactaccccttatagtaaaagtgggattcttttgaaagggaggtca |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15475812 |
gatagagtgttctgaatgcgttgatggatgtgtttcttcaatcatgaatggcaacactaccccttatagtaaaagtgggattcttttgaaagggaggtcg |
15475911 |
T |
|
| Q |
501 |
ttgatttatgaatgtggtccattttgtagatgtccatctcattgc |
545 |
Q |
| |
|
|| ||||||||||| ||||| |||||||| ||||| || |||||| |
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|
| T |
15475912 |
ttaatttatgaatgcggtcctttttgtagctgtccttcgcattgc |
15475956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 545
Target Start/End: Complemental strand, 15168340 - 15167797
Alignment:
| Q |
1 |
tcagggttattcgaggttttcgatatgaaggtggtacttctactactagtagtaaggtttttgtttatgatggcttgtataagataattgaattttggtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
15168340 |
tcagggttattcgaggttttcgatatgaaggtggtacttctactactagtagtaaggtttttgtttatgatggcttgtataagataattaaattttggtt |
15168241 |
T |
|
| Q |
101 |
tgaaaaaggtatatctgggtttggtgtttataagtttaagctatcaagggttcaaggtcaacctaagatgggtagtatgatccttaaggaagccagtatg |
200 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15168240 |
tgaaaaaggtatatctaggtt-ggtgtttatcagtttatgttatcaagggttcaaggtcaacctaagatgggtagtatgatccttaaggaagccagtatg |
15168142 |
T |
|
| Q |
201 |
cttatgagaggccatttatgtgataatcatatgtatgtcctttctgatgatatttcaaatgggaaggagaatattggtgtgaggctatataatgacattg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||| |||| |||| |
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|
| T |
15168141 |
cttatgagaggccatttatgtgataatcatatgtatgtcctttctgatgatatttccaatgggaaggagaatatcggtgtgaggttatattatgagattg |
15168042 |
T |
|
| Q |
301 |
atagtgatctctatcctatgcaatttgagtatctcccgaaggcggcatttccaatgttcttgcttcctcatagtatgacgacaacgaaaaagatgagggt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| | ||||||||||||||| |
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|
| T |
15168041 |
atagtgatctctatcctatgcaatttgagtatctcccaaaggcggcatttccaatgttgttgcttcctcaaagtatgacgacgaggaaaaagatgagggt |
15167942 |
T |
|
| Q |
401 |
gatagagtgttctgaatgcgttgatggatgtgtttcttcaatcatgaatggcaacactaccccttatagtaaaagtgggattcttttgaaagggaggtca |
500 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15167941 |
gatagagtgttctgaatgcgttgatggatgtgtttcttcaatcatgaatagcaacactaccccttatagtaaaagtgggattcttttgaaagggaggtct |
15167842 |
T |
|
| Q |
501 |
ttgatttatgaatgtggtccattttgtagatgtccatctcattgc |
545 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| || |||||| |
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|
| T |
15167841 |
ttgatttatgaatgtggtcctttttgtagctgtccttcgcattgc |
15167797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 535
Target Start/End: Original strand, 23253135 - 23253660
Alignment:
| Q |
1 |
tcagggttattcgaggttttcgatatgaaggtggtacttctactactagtagtaaggtttttgtttatgatggcttgtataagataattgaattttggtt |
100 |
Q |
| |
|
|||||||||||||||||||||| | |||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||| | |||||| |
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|
| T |
23253135 |
tcagggttattcgaggttttcggt-tgaaggtg------ctcctactactagtaaggtttttgtttatgatggcttgtataagataattgattgttggtt |
23253227 |
T |
|
| Q |
101 |
tgaaaaaggtatatctgggtttggtgtttataagtttaagctatcaagggttcaaggtcaacctaagatgggtagtatgatccttaaggaagccagtatg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23253228 |
tgaaaaaggtatatctgggtttggtgtttataagtttatgttatcaagggttgaaggtcaacctaagatgggtagtatgatccttaaggaagctggtatg |
23253327 |
T |
|
| Q |
201 |
cttatgagaggccatttatgtgataatcatatgtatgtcctttctgatgatatttcaaatgggaaggagaatattggtgtgaggctatataatgacattg |
300 |
Q |
| |
|
|||| ||||||||| ||||||||| ||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23253328 |
cttaagagaggccaattatgtgat-atcctatgtatgtcctttatgatgatatttccaatgggaaggagaatattggtgtgaggctatataatgacattg |
23253426 |
T |
|
| Q |
301 |
atagtgatctctatcctatgcaatttgagtatctcccgaaggcggcatttccaatgttcttgcttcctcatagtatgacgacaacgaaaaagatgagggt |
400 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||||||| |||||||||| |||||||| |||| ||||||||||| | |||||||||||||| |
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|
| T |
23253427 |
atagtgatct-tatcctatgcaatttgagtatctcctgaaggcggaatttccaatgctcttgcttgctcaaagtatgacgacgaagaaaaagatgagggc |
23253525 |
T |
|
| Q |
401 |
gatagagtgttctgaatgcgttgatggatgtgtttcttcaatcatgaatggcaacactaccccttatagtaaaagtgggattcttttgaaagggaggtca |
500 |
Q |
| |
|
||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
23253526 |
gatagagtgctctgaatgtgttgatggatgcgtttcttcaatcataaatggcaacactaccccttatagtaaaagtgggattcttttgaaagggatgtcg |
23253625 |
T |
|
| Q |
501 |
ttgatttatgaatgtggtccattttgtagatgtcc |
535 |
Q |
| |
|
|||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
23253626 |
ttgatttatgaatgcggtcctttttgtagttgtcc |
23253660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0376 (Bit Score: 213; Significance: 1e-116; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 43 - 535
Target Start/End: Complemental strand, 9396 - 8904
Alignment:
| Q |
43 |
ctactagtagtaaggtttttgtttatgatggcttgtataagataattgaattttggtttgaaaaaggtatatctgggtttggtgtttataagtttaagct |
142 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| | ||| ||||| ||||| ||| |||||| ||| |||||||||||||| | | |
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|
| T |
9396 |
ctactactagtaaggtttttgtttatgatggcttgtataagataactaaatattggtgggaaaatggtgaatctggttttcgtgtttataagtttttgtt |
9297 |
T |
|
| Q |
143 |
atcaagggttcaaggtcaacctaagatgggtagtatgatccttaaggaagccagtatgcttatgagaggccatttatgtgataatcatatgtatgtcctt |
242 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||| ||||||| ||||||||| || ||| || |||||| |||| ||||||||| || |
|
|
| T |
9296 |
atcaagggttaaaggtcaacctaagatcggtagtatgatccttgaggaagctcgtatgcttaagataggtcaattatgttctaattctatgtatgttatt |
9197 |
T |
|
| Q |
243 |
tctgatgatatttcaaatgggaaggagaatattggtgtgaggctatataatgacattgatagtgatctctatcctatgcaatttgagtatctcccgaagg |
342 |
Q |
| |
|
||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
9196 |
tctcatgatatttccaatgggaaggagaatattggtgtgagtttatataatgacattgataatgatcaatatcctatgcaattcgagtatctcccgaagg |
9097 |
T |
|
| Q |
343 |
cggcatttccaatgttcttgcttcctcatagtatgacgacaacgaaaaagatgagggtgatagagtgttctgaatgcgttgatggatgtgtttcttcaat |
442 |
Q |
| |
|
| || ||||| ||| || | ||||| || ||||| |||| | | || ||||| || |||||||||||||| |||||||||||| |||| ||||| |
|
|
| T |
9096 |
ctgcttttccgcaattcgtgttgcctcagagcatgacaacaagggagtcgaggagggcgaaagagtgttctgaatccgttgatggatgcatttcatcaat |
8997 |
T |
|
| Q |
443 |
catgaatggcaacactaccccttatagtaaaagtgggattcttttgaaagggaggtcattgatttatgaatgtggtccattttgtagatgtcc |
535 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||| |||||||| ||||| |
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|
| T |
8996 |
caagaatggcaacacttttccttatagtaaaagtgggattcttctgaaagggaggtcattaatttatgaatgcggtcctttttgtagttgtcc |
8904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 144
Target Start/End: Complemental strand, 29750673 - 29750581
Alignment:
| Q |
52 |
gtaaggtttttgtttatgatggcttgtataagataattgaattttggtttgaaaaaggtatatctgggtttggtgtttataagtttaagctat |
144 |
Q |
| |
|
||||||||| |||||||||||| ||||||| ||| |||| | ||||||||| ||| | ||||| ||||| |||||||||| |||||||| |
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|
| T |
29750673 |
gtaaggtttatgtttatgatggattgtataggattgttgattgttggtttgatgtaggaaagtctggttttggagtttataagtataagctat |
29750581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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