View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8781_high_34 (Length: 253)

Name: NF8781_high_34
Description: NF8781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8781_high_34
NF8781_high_34
[»] chr2 (4 HSPs)
chr2 (1-245)||(19103276-19103520)
chr2 (101-240)||(32131270-32131407)
chr2 (101-227)||(22021296-22021421)
chr2 (148-237)||(26406590-26406678)
[»] scaffold1024 (2 HSPs)
scaffold1024 (101-237)||(1994-2130)
scaffold1024 (2-64)||(1896-1958)
[»] chr3 (8 HSPs)
chr3 (101-241)||(18385306-18385447)
chr3 (101-241)||(33623995-33624134)
chr3 (142-202)||(36030330-36030390)
chr3 (1-75)||(36030442-36030516)
chr3 (2-64)||(33624171-33624233)
chr3 (2-64)||(18385479-18385541)
chr3 (153-228)||(21630223-21630298)
chr3 (197-241)||(27538910-27538954)
[»] chr1 (8 HSPs)
chr1 (101-241)||(11868394-11868534)
chr1 (153-240)||(47399216-47399303)
chr1 (153-240)||(21345476-21345563)
chr1 (153-240)||(39199258-39199345)
chr1 (1-75)||(11868560-11868634)
chr1 (183-240)||(46806506-46806563)
chr1 (162-241)||(16044792-16044871)
chr1 (197-241)||(32924910-32924954)
[»] chr7 (8 HSPs)
chr7 (102-243)||(34357877-34358018)
chr7 (142-243)||(22980558-22980659)
chr7 (148-240)||(22994212-22994303)
chr7 (148-240)||(20605209-20605300)
chr7 (204-238)||(42829411-42829445)
chr7 (174-226)||(7324326-7324378)
chr7 (186-240)||(26715426-26715479)
chr7 (198-226)||(11070064-11070092)
[»] chr6 (5 HSPs)
chr6 (153-240)||(22459911-22459998)
chr6 (101-240)||(21709297-21709434)
chr6 (148-240)||(13546964-13547055)
chr6 (156-241)||(18739531-18739616)
chr6 (148-188)||(14732545-14732585)
[»] chr5 (3 HSPs)
chr5 (102-201)||(33950828-33950927)
chr5 (101-240)||(22128182-22128318)
chr5 (1-75)||(33950948-33951019)
[»] scaffold0597 (1 HSPs)
scaffold0597 (101-237)||(6830-6964)
[»] scaffold0454 (1 HSPs)
scaffold0454 (148-240)||(13896-13987)
[»] scaffold0221 (1 HSPs)
scaffold0221 (173-237)||(10959-11023)
[»] chr8 (3 HSPs)
chr8 (153-222)||(44549345-44549414)
chr8 (197-241)||(27916803-27916847)
chr8 (197-241)||(27963222-27963266)


Alignment Details
Target: chr2 (Bit Score: 109; Significance: 6e-55; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 19103276 - 19103520
Alignment:
Q  1 ttgatttgactaaagacagaaatgggcttcctagttatagatcatcgtagccatttctagtcttattagtttctgnnnnnnnnnnnnnnnnnnnnnnnnn 100  Q
    ||||||| |||||||||||||||| |||||||| ||||||||  |||||||||||||||||||| ||||||||||                             
T  19103276 ttgattttactaaagacagaaatgagcttcctaattatagattctcgtagccatttctagtctttttagtttctgttttgtttttccattttcttttttt 19103375  T
Q  101 gagggtattagcctagtcccccctcttttgtaaannnnnnncctttctttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgtt 200  Q
    |||||||||  |||||||||| |||||||||| |       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19103376 gagggtattgacctagtcccctctcttttgtacaaatttttcctttctttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgtt 19103475  T
Q  201 ggatgccaacctagttgggatgtttcagcttctccctgatgtcca 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  19103476 ggatgccaacctagttgggatgtttcagcttctccctgatgtcca 19103520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 101 - 240
Target Start/End: Complemental strand, 32131407 - 32131270
Alignment:
Q  101 gagggtattagcctagtcccccctcttttgtaaannnnnnncctttctttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgtt 200  Q
    ||||||||| ||||||||||||||| |||||| |       |||||  ||| |||||||| |||||||| | ||||||| | |||||||||| || ||||    
T  32131407 gagggtattggcctagtcccccctcctttgtacagttttc-ccttttattattaatattactacgtatt-gagaggcggtacaggatgggagctgctgtt 32131310  T
Q  201 ggatgccaacctagttgggatgtttcagcttctccctgat 240  Q
    || |||||||||||||||||||||||||||||||||||||    
T  32131309 gggtgccaacctagttgggatgtttcagcttctccctgat 32131270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 101 - 227
Target Start/End: Complemental strand, 22021421 - 22021296
Alignment:
Q  101 gagggtattagcctagtcccccctcttttgtaaannnnnnncctttctttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgtt 200  Q
    ||||||||| ||||||||||||||| |||||| |       | |||||||||||||||||||| |||| ||| |||||| | |||||||||| | |||||    
T  22021421 gagggtattggcctagtcccccctcctttgtacatatttt-cttttctttaataatattattatgtatcaggaaggcggtagaggatgggagttattgtt 22021323  T
Q  201 ggatgccaacctagttgggatgtttca 227  Q
    || ||||||||||||||||||| ||||    
T  22021322 gggtgccaacctagttgggatgcttca 22021296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 237
Target Start/End: Original strand, 26406590 - 26406678
Alignment:
Q  148 tttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgttggatgccaacctagttgggatgtttcagcttctccct 237  Q
    |||| |||||||||||||||||||| | || | ||||||| |||| |||||  || ||||||| ||||||||||| |||| | |||||||    
T  26406590 tttattaatattattacgtattaggaatgcagtaaaggataggagttgttg-ggggtgccaacttagttgggatgcttcaacctctccct 26406678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1024 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: scaffold1024
Description:

Target: scaffold1024; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 101 - 237
Target Start/End: Original strand, 1994 - 2130
Alignment:
Q  101 gagggtattagcctagtcccccctcttttgtaaannnnnnncctttctttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgtt 200  Q
    ||||||||| |||||||||||||||||||||| |       ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1994 gagggtattggcctagtcccccctcttttgtacagatttttcctttctttaataatattattacgtattagggaggcgacaaaggatgggaggtgttgtt 2093  T
Q  201 ggatgccaacctagttgggatgtttcagcttctccct 237  Q
    |  ||||||||||||||||||||||||||||||||||    
T  2094 gcgtgccaacctagttgggatgtttcagcttctccct 2130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1024; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 1896 - 1958
Alignment:
Q  2 tgatttgactaaagacagaaatgggcttcctagttatagatcatcgtagccatttctagtctt 64  Q
    |||||| |||| |||||||||||||||||||| || |||||  || |||||||||||||||||    
T  1896 tgattttactagagacagaaatgggcttcctaattttagattctcttagccatttctagtctt 1958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 101 - 241
Target Start/End: Complemental strand, 18385447 - 18385306
Alignment:
Q  101 gagggtattagcctagtcccccctcttttgtaaannnnnnnccttt-ctttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgt 199  Q
    ||||||||| |||||||||||||||||||||| |        |||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  18385447 gagggtattggcctagtcccccctcttttgtacatattttttcttttctttaataatattattacgtattaggaaggcgacaaaggatgggaggtgttgt 18385348  T
Q  200 tggatgccaacctagttgggatgtttcagcttctccctgatg 241  Q
    ||| ||||||||||||||||||||||||||||||||||||||    
T  18385347 tgggtgccaacctagttgggatgtttcagcttctccctgatg 18385306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 101 - 241
Target Start/End: Complemental strand, 33624134 - 33623995
Alignment:
Q  101 gagggtattagcctagtcccccctcttttgtaaannnnnnncctttctttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgtt 200  Q
    ||||||||| |||||||||| ||||||||||| |       ||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||    
T  33624134 gagggtattggcctagtccctcctcttttgtacatatttt-cctttctttaatattattattacgtattagggagacgacaaaggatgggaggtgttgtt 33624036  T
Q  201 ggatgccaacctagttgggatgtttcagcttctccctgatg 241  Q
    || |||||||||| ||| |||||||||||||||||||||||    
T  33624035 gggtgccaacctaattgagatgtttcagcttctccctgatg 33623995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 36030390 - 36030330
Alignment:
Q  142 cctttctttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgttgg 202  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||| |||||| ||||||    
T  36030390 cctttctttaatagtattattacgtattagggaggcggctaaggatgagaggtgctgttgg 36030330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 36030516 - 36030442
Alignment:
Q  1 ttgatttgactaaagacagaaatgggcttcctagttatagatcatcgtagccatttctagtcttattagtttctg 75  Q
    ||||||| ||||||| ||||||||||||||||| ||||||||  |||||||||||||||  ||| ||||||||||    
T  36030516 ttgattttactaaaggcagaaatgggcttcctaattatagattctcgtagccatttctaacctttttagtttctg 36030442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 33624233 - 33624171
Alignment:
Q  2 tgatttgactaaagacagaaatgggcttcctagttatagatcatcgtagccatttctagtctt 64  Q
    |||||| |||| |||||||||||||||||||| || |||||  ||||||||||||||||||||    
T  33624233 tgattttactagagacagaaatgggcttcctaattttagattctcgtagccatttctagtctt 33624171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 18385541 - 18385479
Alignment:
Q  2 tgatttgactaaagacagaaatgggcttcctagttatagatcatcgtagccatttctagtctt 64  Q
    |||||| |||| |||||||||| ||||||||| || |||||  ||||||||||||||||||||    
T  18385541 tgattttactagagacagaaataggcttcctaattttagattctcgtagccatttctagtctt 18385479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 228
Target Start/End: Original strand, 21630223 - 21630298
Alignment:
Q  153 taatattattacgtattagggaggcggcaaaggatgggaggtgttgttggatgccaacctagttgggatgtttcag 228  Q
    ||||| ||||||||||| |  |||||| | |||||||| | |  |||||||||||||||||||||||||| |||||    
T  21630223 taataatattacgtattggaaaggcggtagaggatgggggtttatgttggatgccaacctagttgggatgcttcag 21630298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 27538954 - 27538910
Alignment:
Q  197 tgttggatgccaacctagttgggatgtttcagcttctccctgatg 241  Q
    |||||||||||||||||||| ||||| ||||| ||||||| ||||    
T  27538954 tgttggatgccaacctagtttggatgcttcagattctcccggatg 27538910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 101 - 241
Target Start/End: Complemental strand, 11868534 - 11868394
Alignment:
Q  101 gagggtattagcctagtcccccctcttttgtaaannnnnnncctttctttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgtt 200  Q
    ||||||||| |||||||||||||||||||||| |       |||| |||||||||||||||||||||||||| ||||| ||||||||| ||| || ||||    
T  11868534 gagggtattggcctagtcccccctcttttgtacaaatatttccttactttaataatattattacgtattaggaaggcgacaaaggatgagagttgctgtt 11868435  T
Q  201 ggatgccaacctagttgggatgtttcagcttctccctgatg 241  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  11868434 ggatgccaacctagttgggatgtttaagcttctccctgatg 11868394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 153 - 240
Target Start/End: Complemental strand, 47399303 - 47399216
Alignment:
Q  153 taatattattacgtattagggaggcggcaaaggatgggaggtgttgttggatgccaacctagttgggatgtttcagcttctccctgat 240  Q
    ||||| ||||||||||||| ||||||  |||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||    
T  47399303 taataatattacgtattagagaggcgctaaaggatgggagttgctgttgggtgccaacctagttgggatgtttcagcttctccctgat 47399216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 153 - 240
Target Start/End: Complemental strand, 21345563 - 21345476
Alignment:
Q  153 taatattattacgtattagggaggcggcaaaggatgggaggtgttgttggatgccaacctagttgggatgtttcagcttctccctgat 240  Q
    ||||| ||||||||||||| |||| || |||||||||||| |  |||||| |||||||||||||||||||||||||||||||||||||    
T  21345563 taataatattacgtattagagaggtggtaaaggatgggagttactgttgggtgccaacctagttgggatgtttcagcttctccctgat 21345476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 153 - 240
Target Start/End: Original strand, 39199258 - 39199345
Alignment:
Q  153 taatattattacgtattagggaggcggcaaaggatgggaggtgttgttggatgccaacctagttgggatgtttcagcttctccctgat 240  Q
    ||||| ||||||||||||| ||||||  |||||||||||| || |||||| |||||||||||||||||||||||||||||||| ||||    
T  39199258 taataatattacgtattagagaggcgataaaggatgggagttgctgttgggtgccaacctagttgggatgtttcagcttctccgtgat 39199345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 11868634 - 11868560
Alignment:
Q  1 ttgatttgactaaagacagaaatgggcttcctagttatagatcatcgtagccatttctagtcttattagtttctg 75  Q
    ||||||| |||||||||| |||||||||||||| ||||||||  |||||||||||| ||||||| ||||||||||    
T  11868634 ttgattttactaaagacataaatgggcttcctaattatagattctcgtagccatttatagtctttttagtttctg 11868560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 46806506 - 46806563
Alignment:
Q  183 aggatgggaggtgttgttggatgccaacctagttgggatgtttcagcttctccctgat 240  Q
    |||||||||| || |||||| |||||| ||||||||||||||||||||||||| ||||    
T  46806506 aggatgggagctgctgttgggtgccaatctagttgggatgtttcagcttctccttgat 46806563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 241
Target Start/End: Original strand, 16044792 - 16044871
Alignment:
Q  162 tacgtattagggaggcggcaaaggatgggaggtgt-tgttggatgccaacctagttgggatgtttcagcttctccctgatg 241  Q
    ||||||||||  |||||| | ||||||| |||||| |||||| |||||||||||||||||| ||||||  |||||| ||||    
T  16044792 tacgtattagaaaggcggtagaggatgg-aggtgtctgttgggtgccaacctagttgggatctttcagactctcccggatg 16044871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 32924954 - 32924910
Alignment:
Q  197 tgttggatgccaacctagttgggatgtttcagcttctccctgatg 241  Q
    |||||| ||||||||||||||||||| ||||| ||||||| ||||    
T  32924954 tgttgggtgccaacctagttgggatgcttcagattctcccggatg 32924910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 102 - 243
Target Start/End: Complemental strand, 34358018 - 34357877
Alignment:
Q  102 agggtattagcctagtcccccctcttttgtaaannnnnnncctttctttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgttg 201  Q
    |||||||| |||||||||||||||||||||| |       |||||||||||||||||||||||||||||| ||| ||||| |||||||||| |  |||||    
T  34358018 agggtattggcctagtcccccctcttttgtacagatttttcctttctttaataatattattacgtattagtgagtcggcagaggatgggagataatgttg 34357919  T
Q  202 gatgccaacctagttgggatgtttcagcttctccctgatgtc 243  Q
    | || |||||||||||| ||||||||||||||||||||||||    
T  34357918 ggtgtcaacctagttggaatgtttcagcttctccctgatgtc 34357877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 142 - 243
Target Start/End: Complemental strand, 22980659 - 22980558
Alignment:
Q  142 cctttctttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgttggatgccaacctagttgggatgtttcagcttctccctgatg 241  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||  ||| || |||||| ||||||||||||||||||||||||| ||||||||||||    
T  22980659 cctttctttaataatattattacgtattagggtggcggcagaggataagagttgatgttgggtgccaacctagttgggatgtttcagtttctccctgatg 22980560  T
Q  242 tc 243  Q
    ||    
T  22980559 tc 22980558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 148 - 240
Target Start/End: Complemental strand, 22994303 - 22994212
Alignment:
Q  148 tttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgttggatgccaacctagttgggatgtttcagcttctccctgat 240  Q
    |||| |||||||| |||||||| | ||||||| | |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  22994303 tttattaatattactacgtatt-gagaggcggtacaggatgggagctgttgttgggtgccaacctagttgggatgtttcagcttctccctgat 22994212  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 240
Target Start/End: Original strand, 20605209 - 20605300
Alignment:
Q  148 tttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgttggatgccaacctagttgggatgtttcagcttctccctgat 240  Q
    |||| |||||||| | |||||| | ||||||| | |||||||||| || |||||  |||||||||||||||||||||||||||||||||||||    
T  20605209 tttattaatattactgcgtatt-gagaggcggtacaggatgggagctgctgttgtgtgccaacctagttgggatgtttcagcttctccctgat 20605300  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 238
Target Start/End: Original strand, 42829411 - 42829445
Alignment:
Q  204 tgccaacctagttgggatgtttcagcttctccctg 238  Q
    |||||||||||||||||||||||||||||||||||    
T  42829411 tgccaacctagttgggatgtttcagcttctccctg 42829445  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 7324326 - 7324378
Alignment:
Q  174 aggcggcaaaggatgggaggtgttgttggatgccaacctagttgggatgtttc 226  Q
    |||||| | |||||||||| | | |||||||||||||||||||||||||||||    
T  7324326 aggcggtagaggatgggagctctagttggatgccaacctagttgggatgtttc 7324378  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 26715426 - 26715479
Alignment:
Q  186 atgggaggtgttgttggatgccaacctagttgggatgtttcagcttctccctgat 240  Q
    ||||||| || |||||| ||||||||||||||  |||||||||||||||||||||    
T  26715426 atgggagctgctgttgggtgccaacctagttga-atgtttcagcttctccctgat 26715479  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 226
Target Start/End: Original strand, 11070064 - 11070092
Alignment:
Q  198 gttggatgccaacctagttgggatgtttc 226  Q
    |||||||||||||||||||||||||||||    
T  11070064 gttggatgccaacctagttgggatgtttc 11070092  T

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Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 153 - 240
Target Start/End: Original strand, 22459911 - 22459998
Alignment:
Q  153 taatattattacgtattagggaggcggcaaaggatgggaggtgttgttggatgccaacctagttgggatgtttcagcttctccctgat 240  Q
    ||||| ||||||||||||| ||||||| |||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  22459911 taataatattacgtattagagaggcggtaaagaatgggagttgttgttgggtgccaacctagttgggatgtttcagcttctccctgat 22459998  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 240
Target Start/End: Complemental strand, 21709434 - 21709297
Alignment:
Q  101 gagggtattagcctagtcccccctcttttgtaaannnnnnncctttctttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgtt 200  Q
    ||||||||| ||||||||||||||| |||||| |       ||||| |||| |||||||| |||||| | | |||||||   |||||||||| || ||||    
T  21709434 gagggtattggcctagtcccccctcctttgtacagttttccccttt-tttattaatattactacgtaat-gagaggcggttcaggatgggagctgctgtt 21709337  T
Q  201 ggatgccaacctagttgggatgtttcagcttctccctgat 240  Q
    || |||||||||||||||||||||||||||||||||||||    
T  21709336 gggtgccaacctagttgggatgtttcagcttctccctgat 21709297  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 240
Target Start/End: Original strand, 13546964 - 13547055
Alignment:
Q  148 tttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgttggatgccaacctagttgggatgtttcagcttctccctgat 240  Q
    ||||||||||||| |||||||||| ||||||  |||| |||| || ||||||||| ||| |||||||||||||||||||||||||||| ||||    
T  13546964 tttaataatattactacgtattagagaggcgttaaagaatggaagttgttgttgggtgc-aacctagttgggatgtttcagcttctccatgat 13547055  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 241
Target Start/End: Complemental strand, 18739616 - 18739531
Alignment:
Q  156 tattattacgtattagggaggcggcaaaggatgggaggtgttgttggatgccaacctagttgggatgtttcagcttctccctgatg 241  Q
    ||||||||||||||||| |||||| | |||||| ||| ||||||||| |||||| |||||||| ||| |||| | ||| |||||||    
T  18739616 tattattacgtattaggaaggcggtagaggatgagagttgttgttgggtgccaatctagttggaatgcttcaacctcttcctgatg 18739531  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 14732585 - 14732545
Alignment:
Q  148 tttaataatattattacgtattagggaggcggcaaaggatg 188  Q
    |||||||||||||||||||||| | ||||||||| ||||||    
T  14732585 tttaataatattattacgtattcgagaggcggcagaggatg 14732545  T

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Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 102 - 201
Target Start/End: Complemental strand, 33950927 - 33950828
Alignment:
Q  102 agggtattagcctagtcccccctcttttgtaaannnnnnncctttctttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgttg 201  Q
    |||||||| |||| ||||||| ||||||||| |       |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33950927 agggtattggcctggtcccccttcttttgtacagatttttcctttctttaataatattattatgtattagggaggcggcaaaggatgggaggtgttgttg 33950828  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 240
Target Start/End: Original strand, 22128182 - 22128318
Alignment:
Q  101 gagggtattagcctagtcccccctcttttgtaaannnnnnncctttctttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgtt 200  Q
    ||||||||| ||||||||||||||| |||||| |       || || |||||||||||||    ||||||| |||| || ||| |||||||| || ||||    
T  22128182 gagggtattggcctagtcccccctcctttgtacagttttcccccttttttaataatattaa---gtattagagaggtggtaaatgatgggagttgctgtt 22128278  T
Q  201 ggatgccaacctagttgggatgtttcagcttctccctgat 240  Q
    || |||||||||||||||||||||||||||||||||||||    
T  22128279 gggtgccaacctagttgggatgtttcagcttctccctgat 22128318  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 33951019 - 33950948
Alignment:
Q  1 ttgatttgactaaagacagaaatgggcttcctagttatagatcatcgtagccatttctagtcttattagtttctg 75  Q
    ||||||| |||||| ||||||||||||||   | ||||||||  | |||||||||||||||||| ||| ||||||    
T  33951019 ttgattttactaaaaacagaaatgggctt---aattatagattcttgtagccatttctagtctttttaatttctg 33950948  T

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Target: scaffold0597 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0597
Description:

Target: scaffold0597; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 101 - 237
Target Start/End: Complemental strand, 6964 - 6830
Alignment:
Q  101 gagggtattagcctagtcccccctcttttgtaaannnnnnncctttctttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgtt 200  Q
    ||||||||| ||||||||||||||| |||||| |       ||||| |||  ||||| ||||||||||||| |||| || |||||||||||| || ||||    
T  6964 gagggtattggcctagtcccccctcctttgtacaatttttcccttttttt--taataatattacgtattagagaggtggtaaaggatgggagttgctgtt 6867  T
Q  201 ggatgccaacctagttgggatgtttcagcttctccct 237  Q
    |  ||||||||||||||||||||||||||||||||||    
T  6866 gcgtgccaacctagttgggatgtttcagcttctccct 6830  T

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Target: scaffold0454 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0454
Description:

Target: scaffold0454; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 240
Target Start/End: Complemental strand, 13987 - 13896
Alignment:
Q  148 tttaataatattattacgtattagggaggcggcaaaggatgggaggtgttgttggatgccaacctagttgggatgtttcagcttctccctgat 240  Q
    |||| |||||||| |||||||| | ||||||| | |||||||||| || |||||| |||||||||||||||||||||||||||||||||||||    
T  13987 tttattaatattactacgtatt-gagaggcggtacaggatgggagctgctgttgggtgccaacctagttgggatgtttcagcttctccctgat 13896  T

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Target: scaffold0221 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 11023 - 10959
Alignment:
Q  173 gaggcggcaaaggatgggaggtgttgttggatgccaacctagttgggatgtttcagcttctccct 237  Q
    ||||||| ||| |||| ||| || |||||| ||||||||||||||||||||||||| ||||||||    
T  11023 gaggcggtaaatgatgagagttgctgttgggtgccaacctagttgggatgtttcagtttctccct 10959  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 44549414 - 44549345
Alignment:
Q  153 taatattattacgtattagggaggcggcaaaggatgggaggtgttgttggatgccaacctagttgggatg 222  Q
    ||||| ||||| ||||| || |||||| | |||||||||| |  |||||| |||||||||||||||||||    
T  44549414 taataatattatgtattgggaaggcggtagaggatgggagtttctgttgggtgccaacctagttgggatg 44549345  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 27916803 - 27916847
Alignment:
Q  197 tgttggatgccaacctagttgggatgtttcagcttctccctgatg 241  Q
    |||||| ||||||||||||||||||| ||||| ||||||| ||||    
T  27916803 tgttgggtgccaacctagttgggatgcttcagtttctcccggatg 27916847  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 27963222 - 27963266
Alignment:
Q  197 tgttggatgccaacctagttgggatgtttcagcttctccctgatg 241  Q
    |||||| ||||||||||||||||||| ||||| ||||||| ||||    
T  27963222 tgttgggtgccaacctagttgggatgcttcagtttctcccggatg 27963266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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